Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1355 ATGTCTTCTTCCTCCAACGAACTCATCCTCACTAGCTCCCCTGACGGGCCAATCATGGTCTACGAGACTGTTAGCCGCGCCGCCGTGACACGGTTCTCCAGCAGCCGATCTCCCTGTCGCGGCCTGACCATGGTGGGCCGGAGATTGTTGGCAGCCTCACACGTATCATCAGACACGGGTGCAGGCTCCATCAACATCTACAATTGGCATGGTTCTTCCGTGTTTCGTAACTTCCCCGTGCCAGAGCCCATTGCCCCTCTCATTGCAACACCCGATGGAGCATTCCTCTTCGGTGGTGGCATCTCAGGGAGTGTTCTATCTCTTTCAGGTTCTTCTGGGGATGTCATCAGATCAATTGTTGTTCATTCAAGTCCAGTTTCCAGTCTTCATCTGAGCAACGATGGGTCACTTGTTATCTCAGGCAGTGAAGATGGAACAGTTGTTGTTGTTCCTAGCTTCAAGATCGTTGCTGAGGGTTCCTTGGAGGAGAATGTGGAAGACTTGATCTTGCACAAATGGAAGGCACATTCTGATTCCGTGACTGCTTTGAAGTCAGTGATGGGTACTTTGGTTTCTTGTTCATTAGACCGAACATGCAAGTTTTGGAATCTGGAAAACTGTGGGGTCCTTATGCAGAATGTGACATTACCTTGTTCCGTTTCTGGGGTTGCCGTAGATTCATCGGGGTCAACGTTTTATGCTGGTGGTGCAGATGGGTTTGTTTATAATGGGCCGGTGAACGTTGAAGGTAGAAAATTAGTGGGTGATGATAAGGGTTGTAAGGTGAGAAAATGGGGTCAAAAGCATAGTGGGTGTATTGTGTCATTGGCTTTGGTGAAGGAAGAGAGGAATGTGGTGTCTGCTGCAGAAGATGGGAGTGTGTGGATGTGGGATGTTGAGAAAGGAGAAGTTGTGATGGTTTTTGGGGATGAATTGATAACTATTAGTGAGATGATTGTGATAAAGGGAAATGGTGGTGGGTTTGGAGTTGGAAAGGGAAATGATGTTGCAGTTGATGAAGGGAATGATGGAGGGAGCTTCACTTGTTCTAGGTTATGTGAAGAAGAGATTCTTAGGACAATGAATCAAATGACAGCCCTTGAGGAGGTCAAGGATGTTGTATTACAAGACAGGAAAAAGGCCATTGAAATGTTGGAATCTGTGATTGAAATGTATGAGAGACTTTTGAAGCTTATCCTTAAGGAAGCTACAAAAGCCATTGAACAAGAAGAAGAAGAAGATGAAGAAGACAAAGATGATGAACATGAAGAAGAACACCAGAATGATGATAAGAAGGAAGGAACTAGTACTTTTGGTCCTCAGTGTACTCAAGAAACATGA 1341 0.4564 MSSSSNELILTSSPDGPIMVYETVSRAAVTRFSSSRSPCRGLTMVGRRLLAASHVSSDTGAGSINIYNWHGSSVFRNFPVPEPIAPLIATPDGAFLFGGGISGSVLSLSGSSGDVIRSIVVHSSPVSSLHLSNDGSLVISGSEDGTVVVVPSFKIVAEGSLEENVEDLILHKWKAHSDSVTALKSVMGTLVSCSLDRTCKFWNLENCGVLMQNVTLPCSVSGVAVDSSGSTFYAGGADGFVYNGPVNVEGRKLVGDDKGCKVRKWGQKHSGCIVSLALVKEERNVVSAAEDGSVWMWDVEKGEVVMVFGDELITISEMIVIKGNGGGFGVGKGNDVAVDEGNDGGSFTCSRLCEEEILRTMNQMTALEEVKDVVLQDRKKAIEMLESVIEMYERLLKLILKEATKAIEQEEEEDEEDKDDEHEEEHQNDDKKEGTSTFGPQCTQET* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1355 446 MobiDBLite consensus disorder prediction 407 446 - -
Vra2g1355 446 MobiDBLite consensus disorder prediction 408 423 - -
Vra2g1355 446 SMART WD40_4 258 298 IPR001680 GO:0005515
Vra2g1355 446 SMART WD40_4 112 151 IPR001680 GO:0005515
Vra2g1355 446 SMART WD40_4 166 203 IPR001680 GO:0005515
Vra2g1355 446 PANTHER OS09G0477800 PROTEIN 1 414 - -
Vra2g1355 446 Gene3D - 162 242 IPR015943 GO:0005515
Vra2g1355 446 Gene3D - 247 311 IPR015943 GO:0005515
Vra2g1355 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 307 IPR001680 GO:0005515
Vra2g1355 446 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 4 303 IPR011047 -
Vra2g1355 446 PANTHER WD-REPEAT PROTEIN 18 1 414 IPR045227 -
Vra2g1355 446 Coils Coil 382 425 - -
Vra2g1355 446 Pfam WD domain, G-beta repeat 170 203 IPR001680 GO:0005515
Vra2g1355 446 Pfam WD domain, G-beta repeat 115 149 IPR001680 GO:0005515
Vra2g1355 446 Gene3D - 1 161 IPR015943 GO:0005515
Vra2g1355 446 ProSitePatterns Trp-Asp (WD) repeats signature. 285 299 IPR019775 -
Vra2g1355 446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 303 - -
Vra2g1355 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 119 149 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1355 Vra-Chr2 21541990 21543330 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1355 99 308 U-box Gene Family AT1G04510 27.230 6.19e-07 49.7