Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1350 ATGGCCATTGCTCTTATCTGCAACCTTCTATTACTCTTTTCTCAGATTTGCAGCGCAGCTGTGACCATCACCCAGCTCGAGCCACTCTCCGACAACGGCACCACCTTGGTTTCCAAGGAGGGAACCTTCGAGTTGGGTTTCTTCAGTCCGGGGAGTTCCAATAACCGCTACATCGGAATCTGGTACAAAAACATCGCTGTCAGAACAGTGGTTTGGGTGGCCAACCGCGACAATCCAATCACACACAACAACAACAACGATTCAAGAACAAACAAGTTGGTCGTAAACCAAGAAGGAAACCTCGTACTTTTCAGCCAGAACGAGACTCTTGTTTGGTCTGCAAATGCAACGAAGAAGGTTCCGAATCCAATTCTGCAGCTTTTGGATTCTGGAAACTTGGTTCTAACAGATGCAAATGAAGAGACTGTTTTTCTGTGGCAGAGCTTTGACTTTCCTTGTGACAAGCTTTTACCAGGGATGAAGCTGGGGTGGGACTTAAAAAGTGGTCTGAACAGAAAACTAACAGCTTGGAAAGCATGGGATGATCCATCTTCTGGGGATTTCACATGGGGAGTGGAGTTAGGAAGCAACCCTGATATCGTGATGAGGAAGGGTGAAACCGAGTACTTTAGGACAGGACCCTACACTGGGAACATGTTCAGTGGGGTATACGGTCCTAGAAACAACCCACTCTACGAATACGTATTCATCAACAACAAAGACGAAGTATATTACAGATACACCCTCAGAAACGCTTCCGTCATCACCATAATCGTCATGAACCAAACCCTTTATCTCCGCCACCGTCTTACGTGGATTCCCGAAGCCAAAGCTTGGACCATTTACCAGTCCCTCCCGATAGACAGTTGCGACGTCTACAACACTTGTGGACCCAACGGAAAGTGTGCCATTGCAGGCTCACCCATTTGCCAGTGCTTGGATGGCTTCGTGCCCAAATCGTCTCAGCAGTGGAATGCCATGGATTGGAGAGAAGGGTGTGTGCGGAGTGCAGAATGGAAGTGTGGGGTGAAAGACAGAGATGGGTTTCGCAGATTTCCGGCTATGAAATTGCCCAACAGCACATTTTCTTGGGTGAATGCAAGTATGACGCTTGAGGAGTGTAGGAATAGGTGTTTGACGAATTGTTCTTGCACTGCTTATTCGAATCTGGACACGAGAGGAGGAGGATCTGGCTGCTCTATTTGGCTTGGTGATCTTCTCGATCTCAGACTTATCGAAAGTGGACAAGATTTGTATGTTCGAATTGCCACTTCCGATACTCATGGTAAACACGGGCGGAGGAAAAAGGTAATCGCGGTGGCTTCCGCCGTCGCATCGTTGGTGTTTGTGATGCTATTAACATTCTGCATTTACATGACCAAATATAAAGGGAAAATGAAAACAAAAATGGCAACGGTGGATAAAAATGAAGGAAAACAAGAAGATTTGGAGCTTCCTTTCTTTGATCTTGCTACATTGGTTAAAGCTACTAATAACTTTTCAATTGAGAATAAGCTTGGTGAGGGTGGTTTTGGACCTGTATACAAGGGTACATTAGTAGATGGACAAGAAATCGCAATCAAAAGACTTTCACGAAGTTCAGGACAAGGATTGAAAGAATTTAGAAATGAAGTCATATTGTGTGCTAAACTTCAACATAGAAATTTGGTTAAGGTTATTGGTTATTGTATTGAACAAGAAGAGAAGATGCTTCTTTATGAATACATGCCCAACAAAAGTCTTGACTTAATTATTTTTGATACATATCAAAGTAAGTCTTTAGATTGGCAAATACGTTTTAGCATTTTGAATGCAATTGCTCGGGGACTTCTTTATCTTCACCAGGATTCTAGATTAAGAATCATACACAGAGATCTCAAATTATCTAATATTTTATTAGATAATGATATGAATCCTAAAATTTCTGATTTTGGTCTTGCGAGAATATGTGGAAGTGATCAAGTTGAAGGAAGTACAAGCATCATAGTTGGAACCCATGGTTACATGGCACCTGAGTATGCTATTGATGGCTTGTTCTCTACGAAATCAGATGTGTTCAGCTTTGGAGTTGTATTACTAGAAATTCTTAGTGGGAAGAAAAATAGAGCATTTACCTTCCAAGACAGCAATCATAACCTTATTGACCATGCATGGAGTTTGTGGAAAGAGGGTACTCCAGAGCTATTGATCGATGCTTGTTTGGAAAACTCATATGATTTGTTTGAAGTTGTACGATGTATTCAAATTGGCCTTTTATGTCTACAACATCATCCAAATGATAGACCAAACATGACATCAGTTGTTGTTATGTTGACCAGCAAAAATGTTTTACCTGAACCTAAGGAGCCTGGTTTCTTAATTAGAAGAATCTCAAAAGAAGAAGATTCTTCTAATAGACAAACATCTTCTTCGGTCAATGAAGCATCTATCTCACTTTTAAATGCTAGATAA 2451 0.4166 MAIALICNLLLLFSQICSAAVTITQLEPLSDNGTTLVSKEGTFELGFFSPGSSNNRYIGIWYKNIAVRTVVWVANRDNPITHNNNNDSRTNKLVVNQEGNLVLFSQNETLVWSANATKKVPNPILQLLDSGNLVLTDANEETVFLWQSFDFPCDKLLPGMKLGWDLKSGLNRKLTAWKAWDDPSSGDFTWGVELGSNPDIVMRKGETEYFRTGPYTGNMFSGVYGPRNNPLYEYVFINNKDEVYYRYTLRNASVITIIVMNQTLYLRHRLTWIPEAKAWTIYQSLPIDSCDVYNTCGPNGKCAIAGSPICQCLDGFVPKSSQQWNAMDWREGCVRSAEWKCGVKDRDGFRRFPAMKLPNSTFSWVNASMTLEECRNRCLTNCSCTAYSNLDTRGGGSGCSIWLGDLLDLRLIESGQDLYVRIATSDTHGKHGRRKKVIAVASAVASLVFVMLLTFCIYMTKYKGKMKTKMATVDKNEGKQEDLELPFFDLATLVKATNNFSIENKLGEGGFGPVYKGTLVDGQEIAIKRLSRSSGQGLKEFRNEVILCAKLQHRNLVKVIGYCIEQEEKMLLYEYMPNKSLDLIIFDTYQSKSLDWQIRFSILNAIARGLLYLHQDSRLRIIHRDLKLSNILLDNDMNPKISDFGLARICGSDQVEGSTSIIVGTHGYMAPEYAIDGLFSTKSDVFSFGVVLLEILSGKKNRAFTFQDSNHNLIDHAWSLWKEGTPELLIDACLENSYDLFEVVRCIQIGLLCLQHHPNDRPNMTSVVVMLTSKNVLPEPKEPGFLIRRISKEEDSSNRQTSSSVNEASISLLNAR* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1350 816 CDD STKc_IRAK 506 772 - -
Vra2g1350 816 SMART blect_4 27 152 IPR001480 -
Vra2g1350 816 SMART serkin_6 500 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1350 816 CDD B_lectin 27 152 IPR001480 -
Vra2g1350 816 Gene3D Hepatocyte Growth Factor 340 423 - -
Vra2g1350 816 Pfam PAN-like domain 341 409 IPR003609 -
Vra2g1350 816 SUPERFAMILY Protein kinase-like (PK-like) 483 805 IPR011009 -
Vra2g1350 816 ProSiteProfiles Bulb-type lectin domain profile. 20 148 IPR001480 -
Vra2g1350 816 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 29 809 - -
Vra2g1350 816 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 29 809 - -
Vra2g1350 816 Pfam S-locus glycoprotein domain 210 320 IPR000858 GO:0048544
Vra2g1350 816 Pfam Domain of unknown function (DUF3403) 773 816 IPR021820 GO:0004674
Vra2g1350 816 MobiDBLite consensus disorder prediction 792 816 - -
Vra2g1350 816 SMART ntp_6 344 422 IPR003609 -
Vra2g1350 816 Gene3D - 15 149 IPR036426 -
Vra2g1350 816 ProSiteProfiles PAN/Apple domain profile. 341 423 IPR003609 -
Vra2g1350 816 Gene3D Phosphorylase Kinase; domain 1 458 575 - -
Vra2g1350 816 Gene3D Transferase(Phosphotransferase) domain 1 576 779 - -
Vra2g1350 816 ProSiteProfiles EGF-like domain profile. 286 322 IPR000742 -
Vra2g1350 816 Pfam D-mannose binding lectin 69 178 IPR001480 -
Vra2g1350 816 MobiDBLite consensus disorder prediction 797 816 - -
Vra2g1350 816 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 183 IPR036426 -
Vra2g1350 816 ProSiteProfiles Protein kinase domain profile. 500 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1350 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Vra2g1350 816 CDD PAN_AP_plant 344 423 - -
Vra2g1350 816 PIRSF SRK 1 816 IPR024171 GO:0004674
Vra2g1350 816 Pfam Protein kinase domain 501 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1350 Vra-Chr2 21497947 21503686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1350 449 816 Receptor kinase-like Gene Family AT4G23150 49.333 2.09e-122 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra2g1350 Pkinase 3.7e-45 CL0016