Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra2g1343 | ATGAGAAGAGTAGCCCTTGCGCTACTCATACGAGTTTACCCTTTGCGCAGCCACAATGCACGGCGCTCGTTCAGCACACTCCTCCCTCCGCCGCGCGAGGTGGTGGAACCCTTCTGCAACCTCTCCGACGTCGTTTCCTCACCTCAAACCTCTCCGTGGGTCCCTCAAATCATCTCCCTCCTCGACGGTTCTCCCTCCATGGAGTCCAACCTCGACTCCTTCTGCCGCCAATACCTCATCTCTCTCTCCCCCGCCTTTGTTTCCCACACGCTCCGCTCCCTCTCCGACCCTCTCACCGCCACGCGCTTCTTCTCTTGGGCCGCCACACAACCCAACTACACCCACTCCCTCGACTGCCACGTGTCCCTCCTCCCCCTCCTGCCCCCCTCCTCCCTCCCCGCCGCTGTCGCCAGCCTCCGCCACGCCAACCTCCCCATCACCCTCCCGGCTGCCCACTCCCTTGCCAAAACCCTAGCCTCCGCCGGCCTCATCCATGATCTCCTCTGGCTGTTCCGCGCCATGACGACCAACAACCTCCCTCTCTCCCTCATCATCCTCAACTCCCTCCTCAACGCCCTCGTCAACGCCTCCCTCGTCGACTCCGCCGAGCGCGTGTTCAAATCAATGCAGGAAGGCGCGTCGCCCAAGCCCGACGTCGTCAGTTACAACACGCTCGTCAAAGGCTACTGCAAGGTCGGGCGAACGCGGGACGCGTTCGCCATGCTTCGCGAAATGGAGGCTGAAAACGTTCCGCCCGATGAGGCCACGTACATGACCCTGATGCAGGCGTGTTACAATGAGGGTGACATAGATTCGTGCGTGAGGCTTTACCATGAGATGGAGGAGGATGAAGTGTTGGTAACGAAAATCCCTTCTCACGCGTATAGTTTAACAATATGTGGTTTGTGTAAGCAGGGGAAGGTTGTGGAGGGTTGTTTTGTGTTTGAGAGTATGATTAAGAAAGGTTGTGTGGCTCACAAGGCTGTGTATACTGCCATGATTGATGGTTATGCCAAGAGCGGGAACATGGATGCGGCGCTCTCGTTTTTGGAGAGGATGAAGGTGGATGGAGTTGAGCCTGATGAGGTTACTTATGGTGCTGTTGTAGGTGGTTTGTGCAAGAGTGGGAAAGTGGAGGAGGCCATGGGTTATTTTAGGTTTTGTAAGGGTAATGGGGTGGGTGTGAATGCTGTGTTCTATTCGAGTTTGATTGATGGGCTTGGGAAGGTTGGGAGGGTGGATGAGGCGGAGAGGCTGTTTGAGGAAATGGCGGAAGTGGGGTGTCCACCGGATTCGTATTGTTACAATGCTCTGATGGATGGTTTGTGCAAGAGTGGGAGGGTTGATGAGGCTCTGGTGTTGTTTAGGCGGATGGAGCAAGAGGGGTGTGAGCAGACTATTTATACTTTTACTATACTTATAAGTGAGCTCTTCAAGGAGAGGAGGAACGAGGAGGCGCTGAAGCTGTGGGAGGAGATGATCGACAAAGGTGTCACGCCGAATGCTGCATGTTTCAGGGCTCTTTCAATTGGGCTGTGTCTTTCAGGGAAGGTTGCAAGGGCCTGCAGGGTGTTGGATGAGCTTGCCCCGATGGGGATTGTTCTGGAGAGAGCCTATGAGGACATGATTGGTGTGCTGTGCAAGGCTGGTCGTGTAAAGGAGGCCTGCAAGTTGGCTGATGGGATTGTGGATAGGGGTAGGGAAATACCAGGAAAGGTTCGGACTGTGCTGATCAATGCCTTGAGGAAGGCTGGTAATGCGGATTTGGCGATTAAGTTAATGCACAGCAAGATTGGTATTGGGTATGATCGAATGCGGAGTGTTAAAAAGCGAGTGAAGTTCCAAACCCTCGTCAACAGCTGA | 1863 | 0.547 | MRRVALALLIRVYPLRSHNARRSFSTLLPPPREVVEPFCNLSDVVSSPQTSPWVPQIISLLDGSPSMESNLDSFCRQYLISLSPAFVSHTLRSLSDPLTATRFFSWAATQPNYTHSLDCHVSLLPLLPPSSLPAAVASLRHANLPITLPAAHSLAKTLASAGLIHDLLWLFRAMTTNNLPLSLIILNSLLNALVNASLVDSAERVFKSMQEGASPKPDVVSYNTLVKGYCKVGRTRDAFAMLREMEAENVPPDEATYMTLMQACYNEGDIDSCVRLYHEMEEDEVLVTKIPSHAYSLTICGLCKQGKVVEGCFVFESMIKKGCVAHKAVYTAMIDGYAKSGNMDAALSFLERMKVDGVEPDEVTYGAVVGGLCKSGKVEEAMGYFRFCKGNGVGVNAVFYSSLIDGLGKVGRVDEAERLFEEMAEVGCPPDSYCYNALMDGLCKSGRVDEALVLFRRMEQEGCEQTIYTFTILISELFKERRNEEALKLWEEMIDKGVTPNAACFRALSIGLCLSGKVARACRVLDELAPMGIVLERAYEDMIGVLCKAGRVKEACKLADGIVDRGREIPGKVRTVLINALRKAGNADLAIKLMHSKIGIGYDRMRSVKKRVKFQTLVNS* | 621 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra2g1343 | 620 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 253 | 287 | IPR002885 | - | |
| Vra2g1343 | 620 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 291 | 325 | IPR002885 | - | |
| Vra2g1343 | 620 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 466 | 500 | IPR002885 | - | |
| Vra2g1343 | 620 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL | 14 | 619 | - | - | |
| Vra2g1343 | 620 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 431 | 465 | IPR002885 | - | |
| Vra2g1343 | 620 | Gene3D | Tetratricopeptide repeat domain | 94 | 290 | IPR011990 | GO:0005515 | |
| Vra2g1343 | 620 | Gene3D | Tetratricopeptide repeat domain | 291 | 390 | IPR011990 | GO:0005515 | |
| Vra2g1343 | 620 | Gene3D | Tetratricopeptide repeat domain | 391 | 482 | IPR011990 | GO:0005515 | |
| Vra2g1343 | 620 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL | 14 | 619 | - | - | |
| Vra2g1343 | 620 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 326 | 360 | IPR002885 | - | |
| Vra2g1343 | 620 | TIGRFAM | PPR: pentatricopeptide repeat domain | 400 | 432 | IPR002885 | - | |
| Vra2g1343 | 620 | TIGRFAM | PPR: pentatricopeptide repeat domain | 363 | 386 | IPR002885 | - | |
| Vra2g1343 | 620 | TIGRFAM | PPR: pentatricopeptide repeat domain | 256 | 285 | IPR002885 | - | |
| Vra2g1343 | 620 | TIGRFAM | PPR: pentatricopeptide repeat domain | 298 | 324 | IPR002885 | - | |
| Vra2g1343 | 620 | TIGRFAM | PPR: pentatricopeptide repeat domain | 220 | 254 | IPR002885 | - | |
| Vra2g1343 | 620 | TIGRFAM | PPR: pentatricopeptide repeat domain | 186 | 211 | IPR002885 | - | |
| Vra2g1343 | 620 | TIGRFAM | PPR: pentatricopeptide repeat domain | 329 | 362 | IPR002885 | - | |
| Vra2g1343 | 620 | TIGRFAM | PPR: pentatricopeptide repeat domain | 433 | 464 | IPR002885 | - | |
| Vra2g1343 | 620 | TIGRFAM | PPR: pentatricopeptide repeat domain | 468 | 502 | IPR002885 | - | |
| Vra2g1343 | 620 | Pfam | PPR repeat | 294 | 323 | IPR002885 | - | |
| Vra2g1343 | 620 | Pfam | PPR repeat | 542 | 563 | IPR002885 | - | |
| Vra2g1343 | 620 | Pfam | PPR repeat | 186 | 211 | IPR002885 | - | |
| Vra2g1343 | 620 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 361 | 395 | IPR002885 | - | |
| Vra2g1343 | 620 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 218 | 252 | IPR002885 | - | |
| Vra2g1343 | 620 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 396 | 430 | IPR002885 | - | |
| Vra2g1343 | 620 | Gene3D | Tetratricopeptide repeat domain | 483 | 617 | IPR011990 | GO:0005515 | |
| Vra2g1343 | 620 | Pfam | PPR repeat family | 472 | 513 | IPR002885 | - | |
| Vra2g1343 | 620 | Pfam | PPR repeat family | 329 | 374 | IPR002885 | - | |
| Vra2g1343 | 620 | Pfam | PPR repeat family | 217 | 265 | IPR002885 | - | |
| Vra2g1343 | 620 | Pfam | PPR repeat family | 396 | 444 | IPR002885 | - | |
| Vra2g1343 | 620 | SUPERFAMILY | HCP-like | 330 | 526 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vra2g1343 | 156 | 602 | Glycosyltransferase | AT1G05670 | 28.512 | 1.80e-51 | 187 |