Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1340 ATGCCTGGGAACAAGTACCCCGGAAACTCGAACCAAATACCGGGTCGTGTGGAACGGCTTCTCAGAGAGAGAGAGCTGAGGAAGAGTGGGAGAGTGATTCAGTTGAAGGAGGTGAATGAGGTCAATGGGAGCAGTGGTGAGGCTTTCGAGAAGGAGAAGGCGCGTTTGAGGGAAGAAGTGAGCGACGCGGGTGATGGTGTTGAAGGGAGTAGGGTGAGGAAGGGGGTGGGGGAAGAGAGGCATGAAACGAAGCCGTTTAGACAGAGGCTGTTGGTGGTTGCTAATAGGTTGCCGGTGTCGGCGGTAAGGAAAGGCGAGGACGCGTGGTCGTTGGAGATAAGTGCCGGGGGTCTCGTCAGCGCGTTGTTAGGTGTGAAGGAGTTTGAGGCAAGGTGGATAGGTTGGGCTGGAGTGAACGTGCCAGATGAGATTGGACAGAAGGCACTTACTAAAGCTTTGGCTGAAAAGAGGTGTATCCCTGTATTTCTTGATGAAGAGATTGTTCATCAGTATTATAATGGCTATTGCAACAATATATTGTGGCCCCTTTTCCACTACCTTGGACTTCCACAAGAAGACCGCCTTGCCACCACGCGCAGTTTTCAGTCTCAGTTTGAGGCATATGAGAAAGCAAATCAGATGTTTGCTGATGTTGTAAACAAGCACTATGAAGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTCCTTCCAAAATGCCTAAAGAAACATAACAAAAAAATGAAAGTTGGATGGTTTCTCCACACCCCTTTCCCATCTTCTGAAATTCACAGGACACTGCCATCTCGTTCAGAGCTCCTGCATTCCGTTCTCGCTGCTGATTTAGTTGGTTTTCACACCTACGATTATGCAAGACATTTTGTTAGTGCCTGTACTCGCATCCTTGGACTTGAAGGTACACCTTATGGGGTTGAGTATCAAGGGAAGCTAACTCGAGTTGCTGCATTTCCAATTGGGATAGACTCGGAACGATTTATACGAGCTCTTGACCTTCCCGCAGTACAAGATCACATCAAAGAACTACAAGAAAGATTTAAAGGCAGAAAGGTAATGTTAGGTGTTGATCGCCTTGATATGATTAAAGGAATCCCGCAGAAAATTCTAGCATTTGAAAAATTTTTGGAAGAAGATCCTTATTGGCGTGATAAAGTTGTTCTACTACAAATCGCTGTCCCGACAAGAACAGATGTTCCTGAGTATCAAAAGCTTACAAGCCAGGTTCATGAAATAGTTGGGCGCATCAATGGCAGATTTGGAACGTTGACTACGGTTCCTATACATCACTTGGATCGCTCACTTGATTTTTATCAACTATGTGCTTTGTACGCTGTTACTGATGTAGCACTAGTCACTTCTTTGAGGGATGGAATGAATCTTGTCAGCTATGAATTTGTGGCCTGCCAGGAGAAAAAGAAAGGGGTTCTCATTCTTAGTGAATTTGCCGGTGCTGCACAGTCTCTTGGGGCTGGGGCAATTCTTGTCAACCCGTGGAACATTACAGAAGTTGCGGCTGCAATTGCCAGGGCTCTGAAGATGCCATCTGCAGAAAGAGAAAAGAGACATAAGCATAATTTTCTTCATGTAAAATCCCACACTGCTCAAGAATGGGCAGGAACCTTCGTAAGTGAACTAAATGACACTGTTATTGAGGCACAACTAAGGACAAGACAAGTTCCACCTCAACTTCCAACCAAGACTGCAATTGAAAGTTATCAGCAATCAACTAATCGATTGCTCATCTTGGGATTCAGTGGAACTTTAACTGAACCAGTCGAAAAAACAGGTGATCAGATTAAGGAAATGGAACTTAAGGTGCATCCAAAACTGAGACAACCCTTGACAGCACTATGCAGTGATCCAAATACCACAGTTGTTGTGCTCAGTGGAAGTGGTAGACAAGTCCTGGATGATAACTTCAAAGAATATGACATGTGGTTGGCGGCTGAGAATGGAATGTTTTTACATCCTTCAAAGGGTGAGTGGATGACGACAATGCCAGAGCATCTGAATATGGAATGGCTTGATAGTGTGAAGCATGTTTTTGAGTACTTCACAGAAAGAACACCTCGGTCACATTTTGATTTTGAAGAAAGAGAAACTTCACTTGTATGGAATTACAAATATGCAGATGTTGAGTTTGGAAAGCTTCAAGCAAGGGACATGCTGCAGCATCTCTGGACAGGTCCAATTTCTAATGCATCAGTTGAAGTTGTTCAAGGGAGTCGATCTGTTGAGGTGCGAGCTGTTGGTGTTACGAAGGGAGCAGCCATTGACCGCATCTTGGGTGAGATAGTGCACAGTAAATCAATGACATCACCAATTGATTATGTTCTTTGCATAGGACATTTTCTGGGGAAGGACGAAGATATTTATTCATTTTTTGAGCCAGATCTTCCTTCTATTGGTGTGGGTCTTCCACGAAGCAAGGTAACATCAGATGGAGCTAAGTTTCCTGTTGAGAGGAAACCATGTTTAAAGGAACCACCAACTAAGAGCGGACCAAAGTCATCTCAAAATAAGGCAACACGAGCAGTGTCAAATTCTGAGAAGAAATCAAACAATCATATCTCCATTACACCACGAAGGGCAGCACCTGAAAAGGTTTCATGGAACGTCCTCGACCTTAAGAAAGAGAATTACTTCTCTTGTGCCATTGGACGAACTCGAACAAATGCTCGGTATACGCTTGATTCATCCGATGATGTTGTTTCATTTCTGAAGGAACTAGCTAATGCTTCTGTCCGAACGTAG 2778 0.4424 MPGNKYPGNSNQIPGRVERLLRERELRKSGRVIQLKEVNEVNGSSGEAFEKEKARLREEVSDAGDGVEGSRVRKGVGEERHETKPFRQRLLVVANRLPVSAVRKGEDAWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFEAYEKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKKHNKKMKVGWFLHTPFPSSEIHRTLPSRSELLHSVLAADLVGFHTYDYARHFVSACTRILGLEGTPYGVEYQGKLTRVAAFPIGIDSERFIRALDLPAVQDHIKELQERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEEDPYWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTTVPIHHLDRSLDFYQLCALYAVTDVALVTSLRDGMNLVSYEFVACQEKKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAAAIARALKMPSAEREKRHKHNFLHVKSHTAQEWAGTFVSELNDTVIEAQLRTRQVPPQLPTKTAIESYQQSTNRLLILGFSGTLTEPVEKTGDQIKEMELKVHPKLRQPLTALCSDPNTTVVVLSGSGRQVLDDNFKEYDMWLAAENGMFLHPSKGEWMTTMPEHLNMEWLDSVKHVFEYFTERTPRSHFDFEERETSLVWNYKYADVEFGKLQARDMLQHLWTGPISNASVEVVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTSPIDYVLCIGHFLGKDEDIYSFFEPDLPSIGVGLPRSKVTSDGAKFPVERKPCLKEPPTKSGPKSSQNKATRAVSNSEKKSNNHISITPRRAAPEKVSWNVLDLKKENYFSCAIGRTRTNARYTLDSSDDVVSFLKELANASVRT* 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1340 925 Gene3D Glycogen Phosphorylase B; 336 539 - -
Vra2g1340 925 MobiDBLite consensus disorder prediction 840 868 - -
Vra2g1340 925 Gene3D Glycogen Phosphorylase B; 80 335 - -
Vra2g1340 925 CDD HAD_TPP 587 820 - -
Vra2g1340 925 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 31 919 IPR001830 GO:0003824|GO:0005992
Vra2g1340 925 MobiDBLite consensus disorder prediction 60 79 - -
Vra2g1340 925 Pfam Glycosyltransferase family 20 89 554 IPR001830 GO:0003824|GO:0005992
Vra2g1340 925 SUPERFAMILY HAD-like 586 919 IPR036412 -
Vra2g1340 925 Gene3D - 676 758 - -
Vra2g1340 925 CDD GT20_TPS 89 554 IPR001830 GO:0003824|GO:0005992
Vra2g1340 925 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 31 919 - -
Vra2g1340 925 MobiDBLite consensus disorder prediction 823 837 - -
Vra2g1340 925 MobiDBLite consensus disorder prediction 821 869 - -
Vra2g1340 925 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 88 556 - -
Vra2g1340 925 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 89 554 IPR012766 GO:0003825|GO:0005992
Vra2g1340 925 Pfam Trehalose-phosphatase 608 812 IPR003337 GO:0003824|GO:0005992
Vra2g1340 925 Gene3D - 590 813 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1340 Vra-Chr2 21347905 21378383 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1340 1 922 Trehalose Biosynthesis Gene Families AT1G78580 75.738 0.0 1449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1340 2 21347905 21378383 Vra2g1340 2 21347905 21378383 ECH