Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1339 ATGTCTCTCTCAACTCAACCATTTCCAATGTCTGAATCTAAAAACCCCAAAATGCATTCCTCCGCCACTTCCCTCCGCCACCTTCCGCCGCTCAAGAGATTCCGACTCATTCAACAACAACAACAACAAACACACCAAAAACACTTTTCCGACTCTTCACCTTTACCCGCCAAAAAACGCAGAGAATCGAGAACCCCTTCTCCTCCTCCTTCTTCCATCCTTCACAACTTCTCCCTCCCCGCCAAAAAACGAGTGTGGGCCCCACACCCCAAAACTCCTCCTTCATCAAACGACATCGTTTCCCCTCCCCAAACCTCCTCTGACGACGCCGCCGCTCCCCCCTTTGATCTCAACATCGAATACAACCCTAACCTCGGAGAATCCGAAAACAACGCCGCCGACGATGACGACGGGGTTTTGTGCTGTGTGTGCCAGAGCACGGACGGGGATCCTGCGGACCCAATCGTCTTCTGCGACGGGTGCGACCTCACGGTGCACGCCTCCTGCTACGGCCACCCTTTGTCGAAGGGAGTCCCCGACGGCGACTGGTTCTGCGAACGGTGTCGTGTCGGGGAAGGCAAGAGCGGCACGCGCTGCGCGCTGTGTCCCGCGAGTGAGGGCGCGATGAAGCGCACCGCGGACGGCGCGTGGGCCCACGTGGTGTGCGCGCTGTTCGTGCCGGAGGTGTTTTTCCAGGACCCGGAAGGGAGGGAGGGGATCGACTGCTCCATGGTTCCGAGGAAGAGATGGTCGCAAAGGTGTTACCTTTGCGAGTGTTGTGACGGTTGCGGTCTGGTGTGCTCCGAGCCAAAGTGTGGGTTGGCGTTTCATGTGACATGCGCGCTGAAGGAGGAGCTTTGGATTGAGTACAAGGAAGGGAAGAAAGGGGGCACCATTGTTGCTGGCTTCTGCAAAACCCACACCCAGATATGGGAAAAGCAATCTGGGAAGTACAAAATTGTCCCTCTTGAAGATGGAAAGTAG 984 0.565 MSLSTQPFPMSESKNPKMHSSATSLRHLPPLKRFRLIQQQQQQTHQKHFSDSSPLPAKKRRESRTPSPPPSSILHNFSLPAKKRVWAPHPKTPPSSNDIVSPPQTSSDDAAAPPFDLNIEYNPNLGESENNAADDDDGVLCCVCQSTDGDPADPIVFCDGCDLTVHASCYGHPLSKGVPDGDWFCERCRVGEGKSGTRCALCPASEGAMKRTADGAWAHVVCALFVPEVFFQDPEGREGIDCSMVPRKRWSQRCYLCECCDGCGLVCSEPKCGLAFHVTCALKEELWIEYKEGKKGGTIVAGFCKTHTQIWEKQSGKYKIVPLEDGK* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1339 327 PANTHER PHD FINGER PROTEINS 21 132 - -
Vra2g1339 327 PANTHER PHD FINGER PROTEINS 134 313 - -
Vra2g1339 327 ProSiteProfiles Zinc finger PHD-type profile. 138 191 IPR019787 -
Vra2g1339 327 CDD PHD_BRPF_JADE_like 140 188 - -
Vra2g1339 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 194 IPR013083 -
Vra2g1339 327 ProSitePatterns Zinc finger PHD-type signature. 141 188 IPR019786 -
Vra2g1339 327 SUPERFAMILY FYVE/PHD zinc finger 133 203 IPR011011 -
Vra2g1339 327 MobiDBLite consensus disorder prediction 35 51 - -
Vra2g1339 327 SMART PHD_3 140 189 IPR001965 -
Vra2g1339 327 SMART PHD_3 253 308 IPR001965 -
Vra2g1339 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 310 IPR013083 -
Vra2g1339 327 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 21 132 - -
Vra2g1339 327 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 134 313 - -
Vra2g1339 327 ProSiteProfiles Extended PHD (ePHD) domain profile. 196 308 IPR034732 -
Vra2g1339 327 Pfam PHD-finger 141 189 IPR019787 -
Vra2g1339 327 MobiDBLite consensus disorder prediction 1 22 - -
Vra2g1339 327 MobiDBLite consensus disorder prediction 1 118 - -
Vra2g1339 327 Pfam PHD-zinc-finger like domain 198 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1339 Vra-Chr2 21338457 21340014 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1339 40 327 C2H2 Transcription Factor Family AT3G14740 47.273 1.05e-96 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vra2g1339 zf-HC5HC2H_2 3.3e-26 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1339 2 21338457 21340014 Vra2g1339 2 21338457 21340014 ECH