Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1334 ATGACAGAGGTAGTTCCTCGAACTGAAGAGGCTGCTGAACCACCAGCATCACCTCAGCCATCTCCTGATGTGCCACATAATATGGAAACTGAACAGTTAACTCCTACAAAGTATTCTATTATGAGTAGGAATGGGGTTGGGACCGCAGGAAAACAGATATCTTTACTTGTGAATCTCTTTGAAGTTTCTGTTAATGCTCCGGAAACACTGTTTTTCCAGTATAGTGTTGCTATTACTTTAGAAGATAAGCGAGCAGTTGAAAGCAAGGTCATTGGGAGAAAAGTGATTAACAGGCTTTACCAAATATACTCTTCTGAACTTGGTGACAAAAGGTTTGCCTATGATGGAGGGAAAACTTTGTACACAGCAGGTCCTCTGCCGCTAAATAAGTATGAGTTCAAAGTTCTTTTGGAGGAATCATTTAGAAAACGCCGTAGTGCTGGTGCTGATGGAAGCCTTTGTGAGGAAAGTAAAAGGTCCAAACATTCTTTTCAGCTAAAGACATTCATGGTGGAGATAAGTTTTGCAGCCAAAATACCCATGCAGTCCATTGCTGTTGCTCTCGAAGGGGTTGACTCAGATGCCAATTCTGAAGATGCGTTGAGGGTGCTTGATACTGTACTGAGGCAGCGTGCAGCTGATTGTGGGTGTCTTTTGGTAAGGCAGTCCTTTTTTCACGATGACCCAAGAAATTTCACTGATGTTGGGGCTGGTGTAACAGCAGTCTCGGGTTTTCATTCCAGTTTTCGTTCTACACCGCGAGGGTTGTCTCTAAATATGGACGTGTCAACAACTGTGATCATAAAACCTGGTCCTGTAATTGATTTTCTGTTATCAAATCAGCAAGTGAGGGAACCCCGTTATATTGACTGGGAAAAGGCCAAAAAGGTGCTTAAAAATTTAAGGGTACAAGCAACTCATCGAAACCTGGAATTTAAAATTTCTGGCTTGAGTGAGAAACCATGCAATCAGCAACTTTTTAGCATGAAGGTTAAAAATGATGACGGCAGTAATGAAGGACAGACGGTGGAGATTACTGTATATGAATATTTTGTCAAACATTGTGGCATTGATCTGCCCTCATCTTATTATTTTCCATGTCTTGATGTTGGAAAACCAAATCGGCCCAACTATCTTCCTTTGGAGCTATGTTCACTTGTGTCCCTCCAACGGTATACAAAGGCACTCTTACCAATGCAAAGAGCATCTTTAGTTGAGAAATCACGCCAAAAGCCTCAAGATAGAATCAAAATTCTGAAAAATGCTGTAGGAAACTATTGCTATGATGATGATCCTGTTCTTGCTGCATGTGGCATTTCTGTTGATAAACAATTGGCTCTTGTTGAAGGTCGTGTCCTTGAGGCACCACAGTTAAAGGTTGGCCAGAATGATGTTTGCATCCCATGTAATGGAAGGTGGAATTTTAATAAGAAGACACTTCTACAACCATCGCATATTGATTATTGGGCTGTTGTCAACTTTTCTGCAAGATGTGATACTAGTTACTTATCAAGGGAGCTGATCAGATGTGGAATGAGCAAGGGCATTAACATTGAACGGCCACATTCTTTGATAGAGGAGGAACCACAGTTGAGAAGATCTAACCCTGTTGCAAGGGTTGAAAGAATGTTTGACCTGCTGAAATCAAAACTAAATAGAGAACCAAAGTTGATTCTTTGTGTCTTACCAGAGAGGAAAAATTGTGATATATATGGGCCTTGGAAAAAGAAGTGTCTGAGTGAAGTCGGTGTTGTCACACAGTGCATTTCCCCTATCAAGATCACTGATCAATACCTTAATAACATACTTCTCAAAATCAATTCTAAGCTTGGAGGAATAAATTCTCTGTTGGCAATGGAGCATTCTGGCCATCTTCCCTTAATTAAAGACACCCCAACAATGATTTTGGGGATGGATGTCTCTCACAGAGGTCAATTAGATATTCCATCAGTTGCAGCTGTTGTTGGATCTCGATGTTGGCCATTGATTTCAAGGTATAGAGCGTCTGTGAGATTGCAGGCATCTAAGGTAGAGATGATTGATGCTCTATACAAGCCATTGGAAAATGGGGGTGACGATGGTATTATCAGGGAATTGCTGCTAGATTTCTATGATTCAAGTAACAGCCGCAAGCCAACTCAATTTATTGTCTTCAGGGATGGAGTAAGTGAATCACAATTTCAACAAGTCTTGACTGTCGAGCTTGACCAGATAATAAAGGCCTATCAACGTCTGGGTGAGGATGATGTTCCCAAGTTCACCGTGATAGTGGCACAGAAAAATCATCATACTAGGCTGTTTCAGACTAAAAGTCCGGAAAATATTCCTCCAGGGACTGTTGTGGACACAGCAATCACGCATCCAAGAAATTATGATTTTTACATGTGTGCTCATGCGGGGATGATGGGAACATCTAGGCCTGTACATTATCATGTGCTACTTGATGAGATTGGTTTCTCAGCAGATGGCTTACAAAATTTGATCAATTCGCTGTCCTATGTGAACCAAAGAAGCACGATTGCAACCTCAGTTGTGGCACCCATATGCTATGCTCATCATGCTGCAGCTCAGATTGGACAATTTTTGGATGTTAATGATTTATCAGAAACGGGCTTAAGTTCTACTGCAGAGCTTCCAAGATTGCATAAGAATATCAGGAGTTCTATGTTCTTCTGTTGA 2679 0.4121 MTEVVPRTEEAAEPPASPQPSPDVPHNMETEQLTPTKYSIMSRNGVGTAGKQISLLVNLFEVSVNAPETLFFQYSVAITLEDKRAVESKVIGRKVINRLYQIYSSELGDKRFAYDGGKTLYTAGPLPLNKYEFKVLLEESFRKRRSAGADGSLCEESKRSKHSFQLKTFMVEISFAAKIPMQSIAVALEGVDSDANSEDALRVLDTVLRQRAADCGCLLVRQSFFHDDPRNFTDVGAGVTAVSGFHSSFRSTPRGLSLNMDVSTTVIIKPGPVIDFLLSNQQVREPRYIDWEKAKKVLKNLRVQATHRNLEFKISGLSEKPCNQQLFSMKVKNDDGSNEGQTVEITVYEYFVKHCGIDLPSSYYFPCLDVGKPNRPNYLPLELCSLVSLQRYTKALLPMQRASLVEKSRQKPQDRIKILKNAVGNYCYDDDPVLAACGISVDKQLALVEGRVLEAPQLKVGQNDVCIPCNGRWNFNKKTLLQPSHIDYWAVVNFSARCDTSYLSRELIRCGMSKGINIERPHSLIEEEPQLRRSNPVARVERMFDLLKSKLNREPKLILCVLPERKNCDIYGPWKKKCLSEVGVVTQCISPIKITDQYLNNILLKINSKLGGINSLLAMEHSGHLPLIKDTPTMILGMDVSHRGQLDIPSVAAVVGSRCWPLISRYRASVRLQASKVEMIDALYKPLENGGDDGIIRELLLDFYDSSNSRKPTQFIVFRDGVSESQFQQVLTVELDQIIKAYQRLGEDDVPKFTVIVAQKNHHTRLFQTKSPENIPPGTVVDTAITHPRNYDFYMCAHAGMMGTSRPVHYHVLLDEIGFSADGLQNLINSLSYVNQRSTIATSVVAPICYAHHAAAQIGQFLDVNDLSETGLSSTAELPRLHKNIRSSMFFC* 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1334 892 Gene3D paz domain 264 392 - -
Vra2g1334 892 Gene3D - 452 618 - -
Vra2g1334 892 SMART PAZ_2_a_3 271 410 IPR003100 GO:0005515
Vra2g1334 892 SMART Piwi_a_2 557 863 IPR003165 GO:0003676
Vra2g1334 892 Gene3D - 624 892 IPR036397 GO:0003676
Vra2g1334 892 ProSiteProfiles PAZ domain profile. 295 388 IPR003100 GO:0005515
Vra2g1334 892 SUPERFAMILY Ribonuclease H-like 541 861 IPR012337 -
Vra2g1334 892 Pfam PAZ domain 274 400 IPR003100 GO:0005515
Vra2g1334 892 Pfam Argonaute linker 1 domain 220 269 IPR014811 -
Vra2g1334 892 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 33 891 - -
Vra2g1334 892 Pfam Piwi domain 557 861 IPR003165 GO:0003676
Vra2g1334 892 Pfam N-terminal domain of argonaute 51 208 IPR032474 -
Vra2g1334 892 Pfam Argonaute linker 2 domain 417 459 IPR032472 -
Vra2g1334 892 ProSiteProfiles Piwi domain profile. 557 863 IPR003165 GO:0003676
Vra2g1334 892 SUPERFAMILY PAZ domain 265 428 IPR036085 GO:0005515
Vra2g1334 892 CDD PAZ_argonaute_like 270 387 - -
Vra2g1334 892 CDD Piwi_ago-like 432 857 IPR045246 -
Vra2g1334 892 SMART DUF1785_2 218 270 IPR014811 -
Vra2g1334 892 PANTHER PROTEIN ARGONAUTE 6 33 891 - -
Vra2g1334 892 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1334 Vra-Chr2 21273396 21286703 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1334 43 892 Eukaryotic Initiation Factors Gene Family AT5G43810 36.485 2.81e-157 485