Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1333 ATGGGATGGATGTCACATGGTTTGGCTTTTGCTCTCGTTGCTGTGTTCTTCTGTCACTTGAGTTTCTTCGTTAGCTTTTCTCAAGCTCAATCTGCAAACGCCACCACTGACCCTTCTGAAGCAAGAGCTTTAAATTCAATATTCAGCAGATGGGATATATCTGCAGACACAAGTTTGTGGAATATAAGCGGTGAACTGTGCAGTGGAAATGCCATTGACAGTACTTCCACCCCTGAAACTTACAATCCATTCATTAGATGTGACTGTTCATTTGACAATCGAACTACTTGCCACATCACAGCACTGAGGGTCTATGCACTGAACGTGTTTGGTGAAATTCCAGAAGAGCTATGGACTCTCACCTATCTCAACAATTTAAATATTGGGCAAAATTACTTGACGGGTTCTCTGCCTCCAGCTATTGGAAATCTAACTCGTATGCAATACTTGAGCCTTGGAATCAATAATTTATCAGGGGAGCTTCCAAAGGAATTGGGAAATCTTACAGAGTTATTATCACTGAGTATTTCGTCAAACAATTTCTCAGGATCTCTCCCATCCGAACTTGGGAAACTCACAAAGTTAGAACAACTCTACATTGATAGTTCTGGAATTAGTGGTCCAATTCCATCCTCATTTGCAGACCTTACGAGTTTGGCAATAGTATATGCTTCAGACGTGGAACTCACAGGCAATATACCAAACTTCATAGGGAATTGGACTAGGCTTCAAGTCTTGAGGTTTCAAGGAAATTCTTTTAATGGCTCAATACCCTCGTCACTTTCCAACTTGACTTCTTTAACAGAATTGAGAATAAGTGGTTTATCTAATGGGAGCTCCTCACTGGAATTTCTACAGAATATGAAATCTTTGACTACCTTAGAATTGAGGAATAACAATATTTCTGGTTCAATCCCATCCTTCATTGGAGAGGTCAATTTGACCCAACTGGATTTAAGTTTCAATAGCATCGAAGGACAAATTCCGGGTTCAATTTTCAATTTGAGCTCGCTCACTACCTTGTTTCTTGGAAATAATAAACTAAATGGCACCCTTCCGACACAGATACGTTCATCACTTCAGAATATAGACTTGTCATACAATGATCTATCAGGAAGCCTCCCCTCTTGGGTAAACGAAGCTAATTTACAACTGAATTTAGTTGCTAACAACTTGTCGATAGATGATGGTTCAGATACCAGTGGCTTGCCATTTGGGCTCAACTGTCTCCAGAAAAATTTTCCTTGTAATCGAGGTGTTGGAAGATATTCTGACTTTGCTATCAAGTGTGGCGGACCCCAAATTACGTCCACAGAAGGAATCACATATGAAAGGGAGAATGAGACACTTGGTTCTGCTACATACTTTGTTACTGATACAAGTAGATGGGCTGTTAGTAATGTTGGATTGTTTACGGGCAATAATAATCCAGAATACACAAAATTTGTGTCTAATCAATTCACTAACACTATGAATACGGAGCTCTTCCAAACAGCACGGGTCTCTCCTTCATCATTAAGATATTATGGCTTGGGGCTGGAAAATGGCTTTTACAACATCACCCTTCAATTTGCAGAAACAGCTATTCTGGATTCTGCTGGAAGATGGGAAAGTCTTGGGAGACGAGTCTTTGATATATATATCCAGGGGAATCTTGTTTTGAAAGATTTCGACATAAAAAAGGAAGCTGGGGGCATCTCATTCAGAGCTGTCCAAAGGCAATTTAGGTTTGAAGTGACGGAAAACTATATTGACATCCATCTCTTTTGGGCTGGAAAGGGGACTTGTTGCATACCAGCTCAAGGTACTTATGGGCCCTTGATTCAAGCCATCCATGCTATCCCAGATTTTATACCTACTGTCAGTAACGAACCTCCAAGCAATTCAAATAATAGAACCGGCCTTATTGTTGGAATTGTTGTTGGAGTTGGAGTTGTAGCCTTCCTATCAGTTTTTGTGATTTTCTGTATCATTCGGAGAAGAAAACGTCAGCATGAGGATGAAGAGCTTTTAGGAATTGATACAAAGCCATACACTTTCAGTTATTCTGAGTTGAAGAATGCTACAAATGACTTTAATGTCGAAAATAAGCTTGGAGAGGGAGGTTTTGGACCTGTTTATAAGGGGACACTTAATGATGGAAGAGTTATTGCTGTGAAACAACTGTCAGTAGCATCTCATCAAGGAAAGAGCCAGTTCATAGCTGAGATTGCTACTATATCAGCTGTACAACATCGTAATCTGGTTAAACTATATGGATGTTGCATTGAGGGAAATAAGAAACTTCTTGTGTACGAGTATCTGGAGAATAAGAGTCTTGATCAAGGATTATTTGGAAATTCTTTAACCCTCAATTGGTCCACACGCTATGATATTTGCACGGGTATTGCCAGAGGTTTAGCTTATTTACATGAAGAGTCTCGTCTCCGTATTGTACACCGTGATGTGAAGGCTAGTAATATTTTGCTTGACTACGAGCTTGTACCCAAAATATCTGATTTTGGATTGGCCAAATTGTACGATGATAAAAAGACCCACATAAGCACCCGTGTGGCTGGAACAATTGGATATCTTGCACCGGAGTATGCCATGCGTGGACACCTTACAGAGAAAGCAGATATATTTTCATTTGGGGTTGTTGCTCTTGAGTTAGTAAGTGGGAGACCAAATTCTGATTCACGTTTGGAAGGAGACAAGGTCTATCTTCTTGAATGGGCTTGGCAGCTTCATGAAAGCAACCTCATAATGGATCTCGTGGACCCTAGACTTTCAGAATTCAATGAGGAAGAAGTAAAACGTATTGTGGGAATAGCACTTCTGTGCACTCAGACATCACCATCATTAAGGCCATCAATGTCACGAGTGGTGGCAATGCTTTCAGGAGATATTGAAGTGAACACTGTTACTTCAAAGCCTGGATACCTTACTGACTGGAAATTTGATGATGTTAGCAGCTTCATGACTGAAAATGAGATCAAAGGATTGAATACAAGTTACCAGTCTTCATCGGGAAGTACCAGCATGGTGGGTGGTGCAGACTATTCACCCATAAGTGTTTCTAAACCCATCCTTGAGGATGCTCTTAATGAGGGTAGGTAA 3099 0.4043 MGWMSHGLAFALVAVFFCHLSFFVSFSQAQSANATTDPSEARALNSIFSRWDISADTSLWNISGELCSGNAIDSTSTPETYNPFIRCDCSFDNRTTCHITALRVYALNVFGEIPEELWTLTYLNNLNIGQNYLTGSLPPAIGNLTRMQYLSLGINNLSGELPKELGNLTELLSLSISSNNFSGSLPSELGKLTKLEQLYIDSSGISGPIPSSFADLTSLAIVYASDVELTGNIPNFIGNWTRLQVLRFQGNSFNGSIPSSLSNLTSLTELRISGLSNGSSSLEFLQNMKSLTTLELRNNNISGSIPSFIGEVNLTQLDLSFNSIEGQIPGSIFNLSSLTTLFLGNNKLNGTLPTQIRSSLQNIDLSYNDLSGSLPSWVNEANLQLNLVANNLSIDDGSDTSGLPFGLNCLQKNFPCNRGVGRYSDFAIKCGGPQITSTEGITYERENETLGSATYFVTDTSRWAVSNVGLFTGNNNPEYTKFVSNQFTNTMNTELFQTARVSPSSLRYYGLGLENGFYNITLQFAETAILDSAGRWESLGRRVFDIYIQGNLVLKDFDIKKEAGGISFRAVQRQFRFEVTENYIDIHLFWAGKGTCCIPAQGTYGPLIQAIHAIPDFIPTVSNEPPSNSNNRTGLIVGIVVGVGVVAFLSVFVIFCIIRRRKRQHEDEELLGIDTKPYTFSYSELKNATNDFNVENKLGEGGFGPVYKGTLNDGRVIAVKQLSVASHQGKSQFIAEIATISAVQHRNLVKLYGCCIEGNKKLLVYEYLENKSLDQGLFGNSLTLNWSTRYDICTGIARGLAYLHEESRLRIVHRDVKASNILLDYELVPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADIFSFGVVALELVSGRPNSDSRLEGDKVYLLEWAWQLHESNLIMDLVDPRLSEFNEEEVKRIVGIALLCTQTSPSLRPSMSRVVAMLSGDIEVNTVTSKPGYLTDWKFDDVSSFMTENEIKGLNTSYQSSSGSTSMVGGADYSPISVSKPILEDALNEGR* 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1333 1032 CDD STKc_IRAK 698 959 - -
Vra2g1333 1032 Gene3D Ribonuclease Inhibitor 37 278 IPR032675 -
Vra2g1333 1032 Pfam Protein tyrosine and serine/threonine kinase 694 959 IPR001245 GO:0004672|GO:0006468
Vra2g1333 1032 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 137 1020 - -
Vra2g1333 1032 Gene3D Phosphorylase Kinase; domain 1 654 767 - -
Vra2g1333 1032 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 137 1020 - -
Vra2g1333 1032 Gene3D - 425 615 - -
Vra2g1333 1032 Pfam Malectin domain 425 611 IPR021720 -
Vra2g1333 1032 SUPERFAMILY Protein kinase-like (PK-like) 675 979 IPR011009 -
Vra2g1333 1032 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672|GO:0006468
Vra2g1333 1032 ProSiteProfiles Protein kinase domain profile. 692 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1333 1032 SMART serkin_6 692 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1333 1032 Gene3D Ribonuclease Inhibitor 279 397 IPR032675 -
Vra2g1333 1032 Gene3D Transferase(Phosphotransferase) domain 1 768 971 - -
Vra2g1333 1032 SUPERFAMILY L domain-like 95 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1333 Vra-Chr2 21252677 21266911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1333 99 237 Receptor kinase-like Gene Family AT1G56120 27.143 1.80e-08 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra2g1333 PK_Tyr_Ser-Thr 2.9e-47 CL0016