Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1316 ATGGCAATTCCACTACCTTCCACGCTTCTCATCATAGCCACCCTATTTCTTCTCTCCTCAAAAATTTCCTCTGAAACCAACACCATCATCACTCAGCTTCACCCACTTACCTATGGAACCAGTTTGGTTTCTGAGGGAGGAACCTTCGAATTAGGTTTCTTCAGCCTAGGTACCACAAAAAACCTCTACCTAGGAATATGCTTCAGAAACATCCCACAAAAAACCATTGTTTGGGTAGCCAATCGCAACAATCCAATCAAGAACACCGGCAACAACTCCACCGAGTTAACCATAACAAAACAAGGAAACCTGGTTCTTCTCAGCAGCAACAACACCGTTCACTGGTCAACAAATGCAACAGCAAAATCTAAATCGGTCAACGTCGTAGCACGGCTATTGGAAACCGGCAACTTTGTCCTCAGAGATGAAAACGACGACAACTTTGAAAACTACTTGTGGCAAAGCTTTGACTATCCTTCGGACACACTTTTACCAGGAATGAAGCTAGGATGGGAAGTAGCAACAGGTCTCAACAGATACATCACTTCTTGGAAGAATTGGGAAGACCCATCTTCTGGTTATTTTTCTTATGGAGTTTCAAGAGGAAACGTCCCAGACATGCAAATTTGGAACGGTTCATCAGTGTTCTACCGAAGTGGCCCTTGGAGTGGGTTTCGATTCAGCGCTACACCGTTATTGAAGCGTCGTCCATTGGTGAATATCAACTTCGTTGATAATCCTAGGGAAAGTTATTACCAAGTTTTTCCGCGAAATAGTTCCATGATTCTGAGAACGGTGATTAACCAAACGGCTAACGCTCTTCTGCGTTTCATTTGGGACGAAGAAACTCAAAACTGGAAGCTTGATTTAGTTATCCCCAGAGACGGTTTTTGCGGCTATGACTACTGTGGCTCTTTCGGGTACTGTGCTGTGACGGGTAACACTTCAACTTGCGAGTGTTTACGAGGGTTTAAGCCAAAATCGGCGGAAAACTGGAGTGCAAAGATTTGGAATGAAGGGTGCGTGAATAGCAGTGATTCATGGAGGTGTCGGGTGAAGAACAAAGACGGGTTCATTAAGGTTAGTAACATGAAGATTCCCGACACTAAAACATCGTGGATGAATCGAAGTATGACAATTGATGAATGTAAGGCTAAGTGTTGGGCAAATTGTTCGTGCACGGCTTATGCTAATTCTGATATCACTGAAAATGGAAGTGGTTATAGCGGTTGCATCATCTGGTTCGGCGATCTGTTGGATTTGAGGTTGCTTCCTGATGCAGGGCAAGATCTATATGTCAGATTGGATATCTCCGCAATTGAAAATAAGGATTATTCAAAGAAAGTGGTGATTGGGGTCACAAGCTCAGTTTCATCCATTGTTGCGGTGCTTGTAATATTAACATTCCTCTACTGTAGAAGAAAAGGTAAAGGTAAAAAAGTAAAGATAAACGGGAGTGAAGATGATCTAGAGCTACCTTTGTTCGATTTTGATACAATAGCATGTGCTACTAATGATTTCTCAGATGACAACATCCTTGGCCAAGGTGGTTTTGGTCCTGTATACAAAGGGACATTATCGGATGGAAAGAATATTGCAGTGAAAAGGCTCTCTGATACATCTGCACAAGGACTCAAGGAATTTAAAAATGAAGTTATATTTTGTTCTAAACTTCAACATCGGAATCTTGTCAAAGTTCTTGGATATTGCATTGAAGAACAAGAAAAATTACTCATTTATGAATACATGCCAAACAAAAGCTTAAACTTCTTTCTTTTTGATAACTCTCAAAGCAAACTCTTAGATTGGTCTACACGATTAAATATTATAACTGGAATTGCTCGAGGACTTCTTTATCTTCATCAAGATTCTAGATTAAGAATCATACACAGAGATTTAAAATCGAGCAATATCTTATTAGATGATGATATGAATCCAAAGATTTCTGATTTTGGATTAGCAAGAGGAGGTAGAGGTGATCAGATTGAAGGGAATACAAGGAGAGTTGTGGGTACATATGGTTATATGGCTCCTGAATATGCAATTGGTGGAGTATTCTCCGTCAAATCTGATGTTTATAGCTTTGGAGTTTTATTATTAGAGGTTTTAAGTGGAAAGAAAAATAAAGGGTTTTCCTACTCAATCCACAACTATAACCTTATTGAACATGCATGGCGGTGTTGGAAAGAAAGCATCCCAATTGAATTCATCGATACTTGTTTAAGGGACTCATACATTCTATCTGAAGCTTTACGATGTATTCATATTGGTCTTTTATGCATACAACACCAACCTAATGATAGACCGAATATGACTTCTGTAGTTACAATGTTAACGAGTGAAAGTACTTTACCACAACCTGAAAAACCTGTTTTCTTAATGGAAAGGGTTCTAGTTGAGGAAGATGTTGGACAACATATGTATTGTCCAACAAATGAAGTAACTATTTCAGACATCGAACCAAGATAA 2469 0.3957 MAIPLPSTLLIIATLFLLSSKISSETNTIITQLHPLTYGTSLVSEGGTFELGFFSLGTTKNLYLGICFRNIPQKTIVWVANRNNPIKNTGNNSTELTITKQGNLVLLSSNNTVHWSTNATAKSKSVNVVARLLETGNFVLRDENDDNFENYLWQSFDYPSDTLLPGMKLGWEVATGLNRYITSWKNWEDPSSGYFSYGVSRGNVPDMQIWNGSSVFYRSGPWSGFRFSATPLLKRRPLVNINFVDNPRESYYQVFPRNSSMILRTVINQTANALLRFIWDEETQNWKLDLVIPRDGFCGYDYCGSFGYCAVTGNTSTCECLRGFKPKSAENWSAKIWNEGCVNSSDSWRCRVKNKDGFIKVSNMKIPDTKTSWMNRSMTIDECKAKCWANCSCTAYANSDITENGSGYSGCIIWFGDLLDLRLLPDAGQDLYVRLDISAIENKDYSKKVVIGVTSSVSSIVAVLVILTFLYCRRKGKGKKVKINGSEDDLELPLFDFDTIACATNDFSDDNILGQGGFGPVYKGTLSDGKNIAVKRLSDTSAQGLKEFKNEVIFCSKLQHRNLVKVLGYCIEEQEKLLIYEYMPNKSLNFFLFDNSQSKLLDWSTRLNIITGIARGLLYLHQDSRLRIIHRDLKSSNILLDDDMNPKISDFGLARGGRGDQIEGNTRRVVGTYGYMAPEYAIGGVFSVKSDVYSFGVLLLEVLSGKKNKGFSYSIHNYNLIEHAWRCWKESIPIEFIDTCLRDSYILSEALRCIHIGLLCIQHQPNDRPNMTSVVTMLTSESTLPQPEKPVFLMERVLVEEDVGQHMYCPTNEVTISDIEPR* 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1316 822 Gene3D Phosphorylase Kinase; domain 1 471 582 - -
Vra2g1316 822 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Vra2g1316 822 CDD STKc_IRAK 513 779 - -
Vra2g1316 822 ProSiteProfiles Protein kinase domain profile. 507 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1316 822 PIRSF SRK 1 822 IPR024171 GO:0004674
Vra2g1316 822 ProSiteProfiles Bulb-type lectin domain profile. 27 153 IPR001480 -
Vra2g1316 822 Pfam D-mannose binding lectin 75 185 IPR001480 -
Vra2g1316 822 CDD B_lectin 35 159 IPR001480 -
Vra2g1316 822 SMART ntp_6 353 435 IPR003609 -
Vra2g1316 822 Gene3D Transferase(Phosphotransferase) domain 1 583 789 - -
Vra2g1316 822 SUPERFAMILY Protein kinase-like (PK-like) 492 800 IPR011009 -
Vra2g1316 822 SMART serkin_6 507 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1316 822 Gene3D - 22 156 IPR036426 -
Vra2g1316 822 Pfam S-locus glycoprotein domain 217 328 IPR000858 GO:0048544
Vra2g1316 822 Pfam PAN-like domain 350 421 IPR003609 -
Vra2g1316 822 CDD PAN_AP_plant 353 435 - -
Vra2g1316 822 ProSiteProfiles PAN/Apple domain profile. 350 436 IPR003609 -
Vra2g1316 822 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 820 - -
Vra2g1316 822 SMART blect_4 33 159 IPR001480 -
Vra2g1316 822 Pfam Protein tyrosine and serine/threonine kinase 511 778 IPR001245 GO:0004672|GO:0006468
Vra2g1316 822 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 16 820 - -
Vra2g1316 822 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 190 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1316 Vra-Chr2 20964194 20969322 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1316 472 822 Receptor kinase-like Gene Family AT4G11530 53.168 1.30e-126 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra2g1316 PK_Tyr_Ser-Thr 3.6e-46 CL0016