Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1304 ATGGTGTTGTCGGCTTCGCCATGTTCCTTGGCGAGAAGCTCGCTGGAGGAGATGCTGGATTCACTTCGACGGAGGGACGAGGAGGAGGAGAAGAAGAAGGACGCGCCACCGGCCTTGCCTCCGAGGCCAACCTCGCGTGCAAGGCTTCCTTCGGCACGGCGGTCGCTGCCAAACGATTTTAAGGTCAGCGGCAGCGAGCGCCGTGTCGTGCTGGAGAACGGAGTTGCAACTAATGGAGAGAGTGAAATGAAGGAGATGGATTTGGGGCAGAAGAGGAGAAAGTGTGGTTTTGGGAGCAAGAGGTTGAAGAAGGATGTGGAGTCTCCTTATGTGGCAATTTCTTCCAGTGATTCATCTGGGAAGGTTTGGGAATTGGATGGTGATGATAGCATATCTTATTTCATCAAAAAGCTTCGTGTTTGGTGTAGGCAACCAAGAGGGCAGTGGGAACTAGGAATTGTCAAGTCAACTTCAGGAGAGGAAGCATTCGTTTCACTCTCAAATGGAAATGTTATGAAAGTGGACAGGTCAGAGATTCTACCAGCAAATCCTGATGGTTTGGAGAATGTGGATGATCTAATTAAACTTTGTTATTTGAACGAACCGTCGGTTCTTCACAATCTTAAATTAAGATATTCTCAGGGGATGATTTATAGTAAAGCAGGGCCAATTTTAATTGCACTCAATCCTTTCAAAGATCTTCAGATGTATGGAAATAAATATGTCTCAGCCTGTAGCCAGAGAACTATGAATGGTCCTCATGTTTATGCTACGGTAGATGCAGCTTATAACAAGATGATGAGAGATGAAGTAAATCAGTCCATTATCATAAGTGGTGAGAGTGGATCTGGGAAGACAGAAACAGCTAAAATTGCAATGCAATACTTAGCTGCTCTTGGCAGTGGTGGTAATTGTGCCATAGAAAATGAATTTCTTCAGATAAATCGTATTCTGGAGGCTTTTGGGAATGCGAAAACAACTAGGAATAACAACTCTAGCAGATTTGGAAAGTTGATTGAAATTCACTTTGGCTCCACGGGTAAAATATTTGGGGCTAAAATTCAAACCTTATTGTTGGAAAAGTCCAGAGTTGTTCAACTGGCCCGTGATGAGAGATCATATCACATATTTTATCAACTTTGTGCTGGATCTTCATCTGATCTTAAAGAGAAACTGAATCTTAGAGCAGTAAGTGAATATAAGTATCTAGTTCAGAGTGATTGCATGTCAATTGATGGTGTTGATGATGCCAAAAACTTTGATCAGCTGATGGAAGCACTGGATGCAGTTCGAGTGTGTAAAGAGGATCAAGAGCTGATCTTTAAGATACTTGCTGCAATACTATGGTTGGGAAATATATCATTCCAAGTAGACAGAGAAAATCACATTGAGGTTGTTGAGGATGAAGCTGTAAACAGTGCTGCCCAGCTCATGGGTTGCAGTTCCCAGGATTTAATGACAGCATTATGTACCCATAAAATCCAAGCTGATGAAGATACTATTGCAAAACATTTGACATTGAAGCAGGCAATTGAAAGAAGAGACGCAATTGTAAAATTTATCTATGCAAGCTTGTTTAACTGGCTCATAGATCAACTTAACAAGTCACTTGAAGTGGGTAAAAAATGTACTTGGAAATCCATAAGTATCCTTGATCTTTATGGGTTTCAGACTTTCCAGAAAAATGGTTTTGAGCAATTTTACATAAATTATGCGAATGAAAGGATTCAACAACACTATAATCGCCATCTGTTTAAACTAGAGCAGGAGGACTATGAATTGGATGGCATTGATTGGACTAAAGTAGATTTTGAGGACAATCAAGGGTGCTTGGATCTATTTGAGAAGAAACCTCAAGGTCTACTTTCTTTATTGGATGAGGAGTCAAATTTACCAAACGCTTCTGATTTGACATTTGCCAGCAAACTTAAGCATCACTTGCACCCTAATCCTTGCTTCAAAGGGGAAAGAGGCAGAGCTTTCCGCATTCGTCACTATGCAGGAGAGGTTCTGTATGATACAAATGACTTTTTAGAAAAGAACAGAGACACGATGTCTTCTGACTGCATTCAATTCCTGTCATCATGTAATTTTGAACTGCTGCAGTTGTTCTCCAAAATGTTTAACCAGTCTCAAAAGCAGACTGTTGCAACAAAGTTCAAGGTTCAATTGTTCAAGTTGATGCATCAGTTGGAGAGCACCATGCCTCACTTTATTCGCTGCATAGCACCAAACACTAAGCAGCTTCCTGACATTTATGATGAAGGACATGTCCTACATCAGCTCAGGTGTTATGGAGTTCCAGAAATCGTTAGACTTTCAAGGGCTGGATATCCTACTCGAATGACCCATCAAGAGTTTTCCGGAAGGTATATGTTTATGCTTTCTGAAGCCAACTTGTCCCATGATCCATTGAGCATCTCAGTTGCTGTTATGCAAAAATTTAATATCCCTTCTGAAATGTACCATGTTGGCTACACCAAATTGTATCTTCGAGCAGGGCAGATTGATGCACTGGAGAATATGAGAAAGCAGATTTTGCAGGGAATAATTAGGATTCAAAAATGTTTCCGTGGTCATCAAGCTCGCGGTTGTTTCTGTGAACTTAAGAATGGAGTGACAACACTACAATCATTTATTCGTGGAGAAAATTCAAGAAGGAAATATGGTGCCATGTCGAAGTCTTCAATAACAATTTATTCTAGAAAACTGGAGGAGATCCATGCAATCATACTATTACAATCTGTAATTCGTGGTTGGCGAGTTAGAAAGGATGCTAGTCATGTAAATAGGTTAAAGAAATATCCTGAAAATGCTAAACCAAGGCGGAAGTCCTTTATGAAGATAATACCAGAAGTACAGGATTTGTCCAAAGAGCCTGTTCAGAATCTGCTTTCAGCTTTAGCAGAACTCCAAAGGCAGGTTGATAAGGCTGATGCAGTTGTAGAGCAAAAGGAAGAGGAATATATTGAGTTGAGGGAACAGCTAAAACAATCTGAGAGAAAGAGGATTGAATATGAGACAAAAATGAAGTCAATGGAGGAGGCTTGGCAAAAGCAGATGGCATCTTTGCAAATGAGTCTTGTTGCTGCTAGAAAGAGCCTTGCTTCTGAGAATGCTACTGTTCAACCTGTAAGACATGATTTGTTGTTACCTCGTGGTTATGATTCTGAAGATACGTCCATGGGATCAAGAACTCCTGGTGGGAGCACACCAATGCTTTCTGGCAATCTGTCTATCACTGATGCAGGGAGACAGGTCAATGGCAATTTGACTACAATCAGCAATCTGATGAAGGAATTCGAGCAACGAACACAGGACTTTGATGATGAAGTAAAAGCTATGCACGATGTCAAACCGGGGCAGTGTGCAAACAAAAACTCGGTTGAAGAACTTAGGAAACTTAAACAGAGATTTGAAGGGTGGAAGAAACAATACAAGATCAGATTACGTGAGACCAAGGCAAGGCTGTATAAATCAGAATCAGAGAAAAGTTGGCGAGCATGGTGGAAGTTAGGCTCCAGAGCATAA 3531 0.4104 MVLSASPCSLARSSLEEMLDSLRRRDEEEEKKKDAPPALPPRPTSRARLPSARRSLPNDFKVSGSERRVVLENGVATNGESEMKEMDLGQKRRKCGFGSKRLKKDVESPYVAISSSDSSGKVWELDGDDSISYFIKKLRVWCRQPRGQWELGIVKSTSGEEAFVSLSNGNVMKVDRSEILPANPDGLENVDDLIKLCYLNEPSVLHNLKLRYSQGMIYSKAGPILIALNPFKDLQMYGNKYVSACSQRTMNGPHVYATVDAAYNKMMRDEVNQSIIISGESGSGKTETAKIAMQYLAALGSGGNCAIENEFLQINRILEAFGNAKTTRNNNSSRFGKLIEIHFGSTGKIFGAKIQTLLLEKSRVVQLARDERSYHIFYQLCAGSSSDLKEKLNLRAVSEYKYLVQSDCMSIDGVDDAKNFDQLMEALDAVRVCKEDQELIFKILAAILWLGNISFQVDRENHIEVVEDEAVNSAAQLMGCSSQDLMTALCTHKIQADEDTIAKHLTLKQAIERRDAIVKFIYASLFNWLIDQLNKSLEVGKKCTWKSISILDLYGFQTFQKNGFEQFYINYANERIQQHYNRHLFKLEQEDYELDGIDWTKVDFEDNQGCLDLFEKKPQGLLSLLDEESNLPNASDLTFASKLKHHLHPNPCFKGERGRAFRIRHYAGEVLYDTNDFLEKNRDTMSSDCIQFLSSCNFELLQLFSKMFNQSQKQTVATKFKVQLFKLMHQLESTMPHFIRCIAPNTKQLPDIYDEGHVLHQLRCYGVPEIVRLSRAGYPTRMTHQEFSGRYMFMLSEANLSHDPLSISVAVMQKFNIPSEMYHVGYTKLYLRAGQIDALENMRKQILQGIIRIQKCFRGHQARGCFCELKNGVTTLQSFIRGENSRRKYGAMSKSSITIYSRKLEEIHAIILLQSVIRGWRVRKDASHVNRLKKYPENAKPRRKSFMKIIPEVQDLSKEPVQNLLSALAELQRQVDKADAVVEQKEEEYIELREQLKQSERKRIEYETKMKSMEEAWQKQMASLQMSLVAARKSLASENATVQPVRHDLLLPRGYDSEDTSMGSRTPGGSTPMLSGNLSITDAGRQVNGNLTTISNLMKEFEQRTQDFDDEVKAMHDVKPGQCANKNSVEELRKLKQRFEGWKKQYKIRLRETKARLYKSESEKSWRAWWKLGSRA* 1177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1304 1176 SMART iq_5 868 890 IPR000048 GO:0005515
Vra2g1304 1176 SMART iq_5 905 927 IPR000048 GO:0005515
Vra2g1304 1176 SMART iq_5 845 867 IPR000048 GO:0005515
Vra2g1304 1176 Gene3D - 372 431 - -
Vra2g1304 1176 MobiDBLite consensus disorder prediction 1059 1073 - -
Vra2g1304 1176 Gene3D Kinesin motor domain 191 772 IPR036961 -
Vra2g1304 1176 ProSiteProfiles Myosin motor domain profile. 188 844 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra2g1304 1176 SMART MYSc_2a 182 845 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra2g1304 1176 Coils Coil 1125 1145 - -
Vra2g1304 1176 PRINTS Myosin heavy chain signature 218 237 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra2g1304 1176 PRINTS Myosin heavy chain signature 272 297 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra2g1304 1176 PRINTS Myosin heavy chain signature 316 343 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra2g1304 1176 PRINTS Myosin heavy chain signature 547 575 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra2g1304 1176 PRINTS Myosin heavy chain signature 600 628 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra2g1304 1176 Gene3D Myosin VI head, motor domain, U50 subdomain 433 712 - -
Vra2g1304 1176 Gene3D - 848 898 - -
Vra2g1304 1176 MobiDBLite consensus disorder prediction 17 37 - -
Vra2g1304 1176 ProSiteProfiles IQ motif profile. 848 875 IPR000048 GO:0005515
Vra2g1304 1176 ProSiteProfiles IQ motif profile. 869 898 IPR000048 GO:0005515
Vra2g1304 1176 Pfam IQ calmodulin-binding motif 908 925 IPR000048 GO:0005515
Vra2g1304 1176 Pfam IQ calmodulin-binding motif 849 863 IPR000048 GO:0005515
Vra2g1304 1176 Pfam IQ calmodulin-binding motif 873 889 IPR000048 GO:0005515
Vra2g1304 1176 PANTHER MYOSIN-2 ISOFORM X1 120 1171 - -
Vra2g1304 1176 Gene3D - 777 845 - -
Vra2g1304 1176 Gene3D - 557 734 - -
Vra2g1304 1176 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 924 IPR027417 -
Vra2g1304 1176 MobiDBLite consensus disorder prediction 14 58 - -
Vra2g1304 1176 Pfam Myosin head (motor domain) 190 832 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vra2g1304 1176 Coils Coil 12 32 - -
Vra2g1304 1176 CDD MYSc_Myo8 202 832 IPR036022 -
Vra2g1304 1176 Coils Coil 961 1016 - -
Vra2g1304 1176 ProSiteProfiles IQ motif profile. 906 934 IPR000048 GO:0005515
Vra2g1304 1176 MobiDBLite consensus disorder prediction 1052 1073 - -
Vra2g1304 1176 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 135 184 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vra2g1304 1176 PANTHER MYOSIN 120 1171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1304 Vra-Chr2 20678803 20703741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1304 1 1170 Myosins gene family AT5G54280 56.536 0.0 1343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1304 2 20678803 20703741 Vra2g1304 2 20678803 20703741 ECH