Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1262 ATGAATACTGCAAAAATTTTGGCTTTGCATTGCTCTTTTGCAAGTGTTGATTATTTGCTTTGTGGTGTTCCACTTCGCATTCGATTATCAGAACAATGCAGAAAGCTGTCTACTCTTGCCATTGCGCAAACCCCACTCATTACTCAATTCCAAACATGTGCAAACGAAAACAAACCTTTGAGCATCGGCAGCCACCCTAACCCGCAAGTTTCATGTTTTCATCAAAAGGGGTTTTCAATAATCACTGATTTCATTCTTGGGAAAGCACTGCACGCGATTTGTGTGAAGGGTGTTCTTCAACTGGGCACATTCCATGCAAACACCTTGATCAACATGTACTGTAAGTTTGGTTGCCTCAAACACGCGCAATATGTGTTCGATAAAATGCCTGAGACTAATGAAGCTTCTTGGAACAACATGATGTCGGGGTTTGTTCGAGTGGGGTGGTACAATGAAGCAATGAGATTCTTCTGCCAGATGCTTGAGCATGGTGTCAGGCCAAATAGTTATGTGGCTGCTAGTTTGGTGACTGCTTGTGATAGGTCGGGGTGCATGGCTGAAGGGGCACTTCAGGCTCATGCCCTTGTGGTCAAATGTGGTTTGGTGAGTGACGTATTTGTTGGCACGAGTTTGCTGCACTTTTATGGTACATGTGGTCGGGTTTCTGAGGTTGACAAACTCTTTCAAGAGATTGAGGAACCTAATATAGTGTCTTGGACTGCTTTGATGGTTGCTTATGCGTATAATGGGTGTTTAAAGGACGTTCTGACTGTTTATCAGTGTTTGAGACACAATGGAGTGTACTGTAATGAAAATGCAATGGCTACAGTTATTAGGTCTTGTGGGATGCTCGGAGATAAGAAGTTGGGTTATCAGGTGCTTGGTAGTGTGATCAAATCTGGACTGGATATTACTGTGTCTGTGGCGAACTCCCTTATTTCTATGTTTGGTAATTTTGATAGCATAGAAGAGGCGTCTTGTGTGTTTGATGACATGAATGAACGTGACACTATTTCATGGAATTCGATAATTACTGCAATTGTACATAATGGTCATTGCGAAGAATCTCTAGAATATTTTTCTCAGATGCGTTATACTCACACAGAAACAGATTATATTACTATCTCGGCCATGTTACCGGTGTGTGGCTCTGCTCAAAATTTAAGGTGGGGAAGAGGGCTTCACGGTATAGTAGTAAAATCTGGACTGGAATCGAATATCTGTGTATGCAATAGTCTTCTAAGTATGTATTCCCAGGCTGGGAAATCGAAGGATGCAGAGCTTGTATTTCATAGAATGTCTGAGAGGGATATAATTTCATGGAATTCCATGATGGCAAATTATGTAGAAAATGGAAATTATCCACGTGCCCTACAACTTTTGATTGAGATGCTCCAAACAAGAAAGGAGAAGAACTATGTAACTTTCACTACTGCATTATCTGCCTGTTATAATTTAGAAAAATTAAAGATGGTTCATGCCTTGGTGATTCTTCTCGGTCTCCATCCCAATTTGATCATAGGTAATGCATTGGTTACCATGTATGGGAAATTTGGTTCGATGGCCGAAGCACAACAGGTGTGCAAAATTATGCATGAGAAAGATGAAGTAACATGGAATGCACTAATAGGTGGACATGCAGATAACAAGGAAACTAATGCGGCAATTGAAGCCTTTAATTTATTGAGAAAAGAAGATGTACCTGTAAGCTACATTACCATTGTTAATCTTCTCAGTGCTTGTTTGTCTCCCGATAACCTTTTGGAACACGGAATGCCCATTCATGCACATATAGTAGTAGCGGGCTTTGAATTAGATACATTTGTGCAAAGCTCCCTAATTACAATGTATGCTCAATGTGGTGATCTTAATACAAGTAACTATATTTTTGATGAATTAGCTAACAAGAATTCTAGCACTTGGAATGCCATTGTGTCTGCAAATGCTCATTATGGACCTGGTGAGGAGGCACTAAAGCTTATAGTAAAGATGAGGAATGATGGGATTCATTTAGATCAGTTTAGCTTCTCCGTAGCTCTTGCCATTATTGGAAACTTAACTTTACTGGATGAAGGTCAGCAGTTTCATGGTTTGATTATCAAACACGGGTTTGACACCAATGATTACGTGTTAAATGCAACAATGGATATGTATGGAAAATGTGGGGAAATTGATGATGTTTTTAGGATCCTTCCCCAACCAAGAAGCAGGTCACATAGATCTTGGAACATTTTAATATCAGCATTAGCCAGGCATGGTTTTTTCCAACAGGCTAGGAAAGCCTTTCATGAGATGCTTGATCTAGGACTGAGACCAGATCATGTCACTTTTGTTTCACTTTTGTCTGCATGTAGCCATGGGGGTTTGGTGGATGAGGGCCTTGCATACTTCTCTTCAATGTCTACCGAATTCTGTGTCCCCATTGGAATAGAGCATTGTGTATGCATAATCGACCTTCTTGGGCGAGCAGGAAGGCTTGCTGAGGCTGAAAGTTTCATTAATAAGATGTCAGTTCCACCAAATGACCTTGTGTGGCGTACACTGCTGGCTTCTTGTAAAATACATGGCAATTTGGAGCTTGCAAGGAAAGCTGCTCACCGCCTTTTCCAACTTGACTTATCAGATGATTCAGCCTATGTTCTTTATTCAAATGTTTGTGCATCAACGAGAAGGTGGGGAGATATGGAGAATGTAAGAAAGCGAATGGAATCACACAACATAAAGAAGAAACCTGCCTGTAGTTGGATCAAGTTGAAAAACCAGGTTACTACTTTCGGAATGGGTGACCAGTATCATCCACAAAATGCACAAATCTATTCAAAGTTGGAAGAACTCAAAAAGATCATTACAGAGGCTGGATATGTGCCTGATACTAGTTATTCATTGCAAGATACAGATGAAGAACAAAAGGAGCATAACCTTTGGAACCATAGTGAGAGAATTGCCCTTGCATTTGGGTTGATCAATAGTCCAGAAGGCTCACCTCTTAGAATTTTTAAGAATCTCCGTGTCTGTGGTGATTGCCACTCTGTTTTCAAGATGGTTAGTCAAACAATTGGCAGGAAAATCATATTAAGGGATGCATACCGGTTTCATCATTTCAGTAATGGCATGTGTTCCTGTTTGGACTACTGGTAA 3138 0.4057 MNTAKILALHCSFASVDYLLCGVPLRIRLSEQCRKLSTLAIAQTPLITQFQTCANENKPLSIGSHPNPQVSCFHQKGFSIITDFILGKALHAICVKGVLQLGTFHANTLINMYCKFGCLKHAQYVFDKMPETNEASWNNMMSGFVRVGWYNEAMRFFCQMLEHGVRPNSYVAASLVTACDRSGCMAEGALQAHALVVKCGLVSDVFVGTSLLHFYGTCGRVSEVDKLFQEIEEPNIVSWTALMVAYAYNGCLKDVLTVYQCLRHNGVYCNENAMATVIRSCGMLGDKKLGYQVLGSVIKSGLDITVSVANSLISMFGNFDSIEEASCVFDDMNERDTISWNSIITAIVHNGHCEESLEYFSQMRYTHTETDYITISAMLPVCGSAQNLRWGRGLHGIVVKSGLESNICVCNSLLSMYSQAGKSKDAELVFHRMSERDIISWNSMMANYVENGNYPRALQLLIEMLQTRKEKNYVTFTTALSACYNLEKLKMVHALVILLGLHPNLIIGNALVTMYGKFGSMAEAQQVCKIMHEKDEVTWNALIGGHADNKETNAAIEAFNLLRKEDVPVSYITIVNLLSACLSPDNLLEHGMPIHAHIVVAGFELDTFVQSSLITMYAQCGDLNTSNYIFDELANKNSSTWNAIVSANAHYGPGEEALKLIVKMRNDGIHLDQFSFSVALAIIGNLTLLDEGQQFHGLIIKHGFDTNDYVLNATMDMYGKCGEIDDVFRILPQPRSRSHRSWNILISALARHGFFQQARKAFHEMLDLGLRPDHVTFVSLLSACSHGGLVDEGLAYFSSMSTEFCVPIGIEHCVCIIDLLGRAGRLAEAESFINKMSVPPNDLVWRTLLASCKIHGNLELARKAAHRLFQLDLSDDSAYVLYSNVCASTRRWGDMENVRKRMESHNIKKKPACSWIKLKNQVTTFGMGDQYHPQNAQIYSKLEELKKIITEAGYVPDTSYSLQDTDEEQKEHNLWNHSERIALAFGLINSPEGSPLRIFKNLRVCGDCHSVFKMVSQTIGRKIILRDAYRFHHFSNGMCSCLDYW* 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1262 1045 Pfam PPR repeat 815 836 IPR002885 -
Vra2g1262 1045 Pfam PPR repeat 310 335 IPR002885 -
Vra2g1262 1045 Pfam PPR repeat 338 364 IPR002885 -
Vra2g1262 1045 Pfam PPR repeat 107 131 IPR002885 -
Vra2g1262 1045 Pfam PPR repeat 639 669 IPR002885 -
Vra2g1262 1045 Pfam PPR repeat 237 267 IPR002885 -
Vra2g1262 1045 Pfam PPR repeat 537 566 IPR002885 -
Vra2g1262 1045 Pfam PPR repeat 439 465 IPR002885 -
Vra2g1262 1045 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 773 807 IPR002885 -
Vra2g1262 1045 Gene3D Tetratricopeptide repeat domain 486 586 IPR011990 GO:0005515
Vra2g1262 1045 Pfam DYW family of nucleic acid deaminases 953 1045 IPR032867 GO:0008270
Vra2g1262 1045 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 133 167 IPR002885 -
Vra2g1262 1045 TIGRFAM PPR: pentatricopeptide repeat domain 136 168 IPR002885 -
Vra2g1262 1045 TIGRFAM PPR: pentatricopeptide repeat domain 775 807 IPR002885 -
Vra2g1262 1045 TIGRFAM PPR: pentatricopeptide repeat domain 537 568 IPR002885 -
Vra2g1262 1045 TIGRFAM PPR: pentatricopeptide repeat domain 409 438 IPR002885 -
Vra2g1262 1045 TIGRFAM PPR: pentatricopeptide repeat domain 741 773 IPR002885 -
Vra2g1262 1045 Pfam E motif 855 917 IPR046848 -
Vra2g1262 1045 Gene3D Tetratricopeptide repeat domain 190 292 IPR011990 GO:0005515
Vra2g1262 1045 Gene3D Tetratricopeptide repeat domain 395 469 IPR011990 GO:0005515
Vra2g1262 1045 PANTHER - 485 680 - -
Vra2g1262 1045 PANTHER - 368 581 - -
Vra2g1262 1045 PANTHER - 588 917 - -
Vra2g1262 1045 PANTHER - 191 384 - -
Vra2g1262 1045 PANTHER - 74 285 - -
Vra2g1262 1045 PANTHER - 263 484 - -
Vra2g1262 1045 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Vra2g1262 1045 Gene3D Tetratricopeptide repeat domain 86 189 IPR011990 GO:0005515
Vra2g1262 1045 Gene3D Tetratricopeptide repeat domain 293 394 IPR011990 GO:0005515
Vra2g1262 1045 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 738 772 IPR002885 -
Vra2g1262 1045 Gene3D Tetratricopeptide repeat domain 736 936 IPR011990 GO:0005515
Vra2g1262 1045 Gene3D Tetratricopeptide repeat domain 587 735 IPR011990 GO:0005515
Vra2g1262 1045 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Vra2g1262 1045 Pfam PPR repeat family 741 785 IPR002885 -
Vra2g1262 1045 Pfam PPR repeat family 133 178 IPR002885 -
Vra2g1262 1045 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 637 671 IPR002885 -
Vra2g1262 1045 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 535 569 IPR002885 -
Vra2g1262 1045 Pfam Pentatricopeptide repeat domain 399 436 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1262 Vra-Chr2 18262606 18266316 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1262 106 768 Glycoside Hydrolase AT3G49170 24.816 6.96e-61 222