Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1258 ATGTTATCTATTTTGTTGTTCTTGTTCTTGTACATATCTAAGACTTCTTATTGTTCCTTAGACAGTTTAGCAGTGAGTGAATCCATCCAAGATGTTAAGAACGAGACTTTGGTATCAGCAGGTGGAATTACTGAACTGGGTTTCTTCAGTCCACGAAATTCAGCAAGAAGATATTTGGGAATATGGTATACAAATGTATCCCCTTTCACTGTGGTATGGGTGGCAAACCGAAATACACCTCTTGAGAATAATTCAGGAGTTCTCAAACTCAACCAAAAAGGGGTTCTTGAGCTGCTCAATGGCACAAACAACATCATTTGGTCATCACCCAACAGATCAAGCAATACAGTGAATGATCCAATTACTCGTCTTTTGGATTCTGGAAATTTTGTTGTGATAAATGGAGGGGAAACAAAAGAGGATAGCATCTTGTGGCAGAGTTTTGATTATCCGGGTGATACACAGATGCCAGAAATGAAGCTTGGATGGAACCTAGAGACTGGTGTGGAAAGATATATAGCATCTTGGAAAAGTGATGAGGATCCTGCAGAGGGAGAATATGTTATAAAAGTGGATCTTAGAGGATATCCTCAAATAATAAAGTTCAAGGGAACTGATATAAAAGCAAGAGCAGGGCCATGGAATGGCTTGTCTCTGGTTGGAAATCCTATTCCAGCTCGTGGTACGTCTGCAAAATTTGTGTTCAATGAGAAAGAGGTGTATTATTGGTACAGTCTTAATGACGAATTGGACTTCTTTGTGTTCACACTGACCCCTTCAGGCACAGGACAAAGTTGGTTTTGGACAACTGAAACAAGAACGAGGCAAGTGATCTCAAGTGGGGAGGAAGATCAATGCGAGAATTATGCCTTTTGTGGTGCAAATTCTGTATGCATTTATGATGGTAACTATCCAATTTGTGAATGCCTTAGAGGGTATGTTCCTAAGTCTCCTGATGAGTGGAATATATCAATTTGGCACAATGGCTGTGTGCCAAGGAATAAATCTAACTGCACGAACATATACACAGATGGCTTCCTGAAATACACGCACATGAAATTGCCAGACACTTCTTCCTCATGGTTTGATGCAACCATGAACCTTGATGAATGTATGAAGTTGTGCATTAGAAACTGTTCTTGTACAGCATGTGCAAATTTAGATGTTCGTGACGAAGGAAGTGGTTGTCTGCTTTGGTTTAATGATCTGGTTGACATGAGGAATTTCTCTCAATGGGGACAAGACTTTTACATCAGAGTCCCTGCTTCCGAATTAGATCATGCTGGCCATGGAAAAATCACCATAAAGATAGCAGCAATTACTGTTGGTGTGATTATTTTCGGATTAGTCACATGTGCATGCATAATTATAAGAAAAAATCCAGGGATAGCTAGAAAACTTTACAGCAAGCATAAGCAGAAAAAGGAAGACCTTGAATTTCCAACTTTCGATTTTCTGGTCATTGCTAATGCTACCGAAAACTTTTCAACCAAAAACAAGCTTGGTGAAGGTGGTTTTGGACCAGTATACAAGGGCATACTGTTAGATGGACAAGAGTTAGCAGTGAAAAGACTCTCAGAGAATTCCGGACAAGGGTTAGAAGAGTTCAAAAATGAAGTTGCTTTGATTGCAAAACTTCAGCACCGTAATCTTGTAAAGCTCCTGGGTTGTTGCATTGAAGGAGAAGAAAAAATGCTAATTTATGAATACATGCCAAACAAAAGCTTGGACTTCTTTGTTTTTGATGAAAGCAAGAGGAAGTTGCTAGATTGGCGCATGAGATTCAACATTATCAGTGGAATTGCTCGAGGACTTGTCTATTTGCATCAAGATTCTAGACTAAGGATTATTCACAGAGATCTTAAAACTAGCAATATTTTATTAGACACAAATTTGGATCCCAAAATAGCAGACTTTGGCTTGGCTCGATCATTTTTGGGAGATCAAGTTGAGGGAAAGACACATAGGGTGGCTGGAACATATGGATACATGCCTCCTGAGTATGCTGCACGTGGACATTTTTCAGTGAAATCAGATGTGTTTAGTTATGGTGTGATAGTACTAGAGATTGTAAGTGGGAAGAAAAACAGGGATTTTTCAGACCCAGAAAACAACAATAATCTTCTTGGCCATGCATGGAGATTATGGACTGAAGAGAGAGCACTCGAACTGCTTGATGAATTGATAGGAGAACAATGCCTAGAGTCTGAAGTCACTCGATGCATACAGGTCGGACTATTGTGTGTGCAACAAAGACCAAACGATAGACCAGACATGTCATCGGTGGTTCTAATGTTGAATGGTGAAAAATCATTACCAAAGCCAAAGGTTCCTGGCTTTTACACTGAATCAGATGTTACAACCGAAACAAATTCTTCATCAGAAAATCACACACTATGCTCAATTAATGAGCTTTCCATCACAATGATAGATGCAAGATAG 2442 0.3948 MLSILLFLFLYISKTSYCSLDSLAVSESIQDVKNETLVSAGGITELGFFSPRNSARRYLGIWYTNVSPFTVVWVANRNTPLENNSGVLKLNQKGVLELLNGTNNIIWSSPNRSSNTVNDPITRLLDSGNFVVINGGETKEDSILWQSFDYPGDTQMPEMKLGWNLETGVERYIASWKSDEDPAEGEYVIKVDLRGYPQIIKFKGTDIKARAGPWNGLSLVGNPIPARGTSAKFVFNEKEVYYWYSLNDELDFFVFTLTPSGTGQSWFWTTETRTRQVISSGEEDQCENYAFCGANSVCIYDGNYPICECLRGYVPKSPDEWNISIWHNGCVPRNKSNCTNIYTDGFLKYTHMKLPDTSSSWFDATMNLDECMKLCIRNCSCTACANLDVRDEGSGCLLWFNDLVDMRNFSQWGQDFYIRVPASELDHAGHGKITIKIAAITVGVIIFGLVTCACIIIRKNPGIARKLYSKHKQKKEDLEFPTFDFLVIANATENFSTKNKLGEGGFGPVYKGILLDGQELAVKRLSENSGQGLEEFKNEVALIAKLQHRNLVKLLGCCIEGEEKMLIYEYMPNKSLDFFVFDESKRKLLDWRMRFNIISGIARGLVYLHQDSRLRIIHRDLKTSNILLDTNLDPKIADFGLARSFLGDQVEGKTHRVAGTYGYMPPEYAARGHFSVKSDVFSYGVIVLEIVSGKKNRDFSDPENNNNLLGHAWRLWTEERALELLDELIGEQCLESEVTRCIQVGLLCVQQRPNDRPDMSSVVLMLNGEKSLPKPKVPGFYTESDVTTETNSSSENHTLCSINELSITMIDAR* 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1258 813 SUPERFAMILY Protein kinase-like (PK-like) 478 781 IPR011009 -
Vra2g1258 813 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 15 811 - -
Vra2g1258 813 Gene3D - 18 148 IPR036426 -
Vra2g1258 813 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 15 811 - -
Vra2g1258 813 ProSiteProfiles Protein kinase domain profile. 495 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1258 813 Pfam Domain of unknown function (DUF3403) 771 813 IPR021820 GO:0004674
Vra2g1258 813 Gene3D Transferase(Phosphotransferase) domain 1 571 776 - -
Vra2g1258 813 SMART blect_4 28 151 IPR001480 -
Vra2g1258 813 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 182 IPR036426 -
Vra2g1258 813 CDD STKc_IRAK 501 768 - -
Vra2g1258 813 ProSiteProfiles EGF-like domain profile. 282 319 IPR000742 -
Vra2g1258 813 PIRSF SRK 1 813 IPR024171 GO:0004674
Vra2g1258 813 Gene3D Phosphorylase Kinase; domain 1 468 570 - -
Vra2g1258 813 CDD B_lectin 34 151 IPR001480 -
Vra2g1258 813 Pfam Protein tyrosine and serine/threonine kinase 497 764 IPR001245 GO:0004672|GO:0006468
Vra2g1258 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672|GO:0006468
Vra2g1258 813 SMART serkin_6 495 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1258 813 Pfam D-mannose binding lectin 70 177 IPR001480 -
Vra2g1258 813 ProSiteProfiles Bulb-type lectin domain profile. 22 145 IPR001480 -
Vra2g1258 813 ProSiteProfiles PAN/Apple domain profile. 338 421 IPR003609 -
Vra2g1258 813 SMART ntp_6 341 420 IPR003609 -
Vra2g1258 813 Gene3D Hepatocyte Growth Factor 337 417 - -
Vra2g1258 813 CDD PAN_AP_plant 335 421 - -
Vra2g1258 813 Pfam PAN-like domain 342 406 IPR003609 -
Vra2g1258 813 Pfam S-locus glycoprotein domain 210 317 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1258 Vra-Chr2 18160733 18164226 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1258 465 813 Receptor kinase-like Gene Family AT4G11480 53.039 1.70e-125 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra2g1258 PK_Tyr_Ser-Thr 2.2e-47 CL0016