Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1250 ATGGGGGATCTCATCTTCTCCTTCAAGACCCAGCAGGAACATGGTCACCAGAGAGCAAAACACAACAAGAAGAGGTTAACCGAGGAGCAGGTTACCATCCTTGAGAAATGCTTTGCTTCCAACATGAAGCTTGAGCCGGAGCAGAAGTTCCACCTTGCAAACCAACTTGCTGTTCCTCCAAGACAAGTTGCCATTTGGTACCAGAACAAAAGGGCACGCTGGAAGACTCAGAGCCTTGAGATGGACCATGGTGTGCTTCAGGCAAAGCTTGAGAATGTCATGGCCGAAAAGAAGCAGCTCGAGAAAGATGTCGAAAGGCTCAAATCTGAGCTCAAGAAAGCCCAAGAGATGCTGCTAATTGGTGATGTTGTCAAAGGTGGAAAAAATAGCAATAATAATAATAATAATAATGGTTCTTGCTGTGAGTTTTCGACTTCTTTGGAAGAGGGAGGGAGTTCTGGTGTGGTGCTTGATGATCATGAGTGTTGGCAAAGTGGTGAGGTTATGCAGGTTGAGGAGCTGTATGCTTACTTCATGGGTGCAAATTATGGGTCAGGCTTGCATGAGAAAAGGGCATAA 579 0.4577 MGDLIFSFKTQQEHGHQRAKHNKKRLTEEQVTILEKCFASNMKLEPEQKFHLANQLAVPPRQVAIWYQNKRARWKTQSLEMDHGVLQAKLENVMAEKKQLEKDVERLKSELKKAQEMLLIGDVVKGGKNSNNNNNNNGSCCEFSTSLEEGGSSGVVLDDHECWQSGEVMQVEELYAYFMGANYGSGLHEKRA* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1250 192 ProSitePatterns 'Homeobox' domain signature. 52 75 IPR017970 GO:0000981|GO:0006355
Vra2g1250 192 ProSiteProfiles 'Homeobox' domain profile. 17 77 IPR001356 GO:0003677
Vra2g1250 192 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-52 10 186 - -
Vra2g1250 192 CDD homeodomain 20 78 IPR001356 GO:0003677
Vra2g1250 192 Coils Coil 83 117 - -
Vra2g1250 192 SUPERFAMILY Homeodomain-like 13 78 IPR009057 -
Vra2g1250 192 Pfam Homeodomain 22 75 IPR001356 GO:0003677
Vra2g1250 192 SMART HOX_1 19 81 IPR001356 GO:0003677
Vra2g1250 192 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 10 186 IPR045224 GO:0003700
Vra2g1250 192 Gene3D - 15 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1250 Vra-Chr2 17953783 17954619 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1250 13 186 Homeobox Transcription Factor Family AT5G53980 42.529 1.83e-38 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vra2g1250 Homeodomain 2e-16 CL0123