Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1243 ATGGACCCTGGCTTAGTCGAGATTCCACCTCCGGTGACTAGCAACACTCCCAATTCGATGAAGCCGGAAGAGGCCATAAGGCATGATGTGATTGACATAGATGACGACAATGATTCTACTGAATTAGTATTAGTTGGTGATAAAGTTGGTAAAATTGACAAGGGGAAGGCGATAGCAACAGTTCATGATGATTATGGTGATCATCAAAATATGGAATTGTTAGATGATGTTATGGATAAATCTGGATCAGGTGATGGGCATAATGCTGACAGTTCATGTGATGATGATGACTACTCTGATTTGTTTTCGGATGATTACATTGATGCAGACCAATCTGCTTTAATACAGACACATTTTGATAATGTGGATATACCTCCCGGAATTGAGGTACCTATTCCTTGGATGGCAGAGTATGATCTAGGTTTGAAAAAAACTAACTATCATTCATTGTCTCCTTGGTCTCATACCATGTCTGGTGCTTACGTTTCTCAAGTGACTGATTCATCTCAGCATTTGTTAACATTAGAGCCTTCTAACCTTGAAACTCAAGGACCTTCTGCAGGTAATTCCAATTTGCAAGTTAAAATGAATACTATTATTCAGCACCCTTCTGGAGTAGAGTTATCTTCCCCTCAGGTAAATTGCCTGAGTAAGAAGAAATCAAATGCCTCAAAACACAGGAGGCATAAGCCAAAGATGGCATTTGGAATGAAGTCATCTAAACCTAATTTATCTACAGGACCTTCTGAGAGTAAAAAGAAGCCTAACATTTTTTATGCTCCAGCTAGCCACATCTTTGTAGACAATTTTGAAGCCAAGAAACTGCAAAATGCAAGTGAGGTACCACATTGGGGACATTTTGGAAATTCTAAGACAGCAGATGGAAGTAAAACTTTGAATCATTCAAATTTTGTTGGATCTTCTTTTCATTTTCCTGGAGTTGAATCATTCATGTGGGCGAAGAAAGATTTTCATTTTCAGCCACTCTCTAGTTATACGGTTAAATCAAGTTTTGGTAGTCCCTTTGTTCCTTTTAGCGCTGCTCCAGAGCCCTTGTTTGATAACTCTTGGGTTCATTATCCTGGGAGAGATGGAAATAATGGAGCAGCTGCGGAAAGTGCTGTTGCTACAATATCCGATGAAGCTAGAGATGAAATTTTGAGGAAATTCCAAAACTTTAAACAATTTGATACTATTGAAAACCCTTCAGACCATTACTTTCTTAATGCTAGCTGTTCCATGAAACAGGTTTCACAGAAATGTGCTAAAAGACTCCAGGAAGAGTGGAAGTCATTGGAGAAGGATTTGCCGGATTCAATATTTGTCAGAGTTTATGAATCAAGAATAGATCTTTTGAGGGCAGTAATTATTGGAGCAGAGGGAACACCTTATCATGATGGCCTTTTCTTTTTTGATTTTTTCTTCCCAAGTAGCTATCCCACTGTACCCCCGGACGTCCACTACCACTCTTGTGGGCTTCGACTCAACCCAAATTTATATAGTTCTGGCAAAGTTTGCCTTAGTCTACTTAACACCTGGTCTGGTCATGAGAATGAGAAGTGGCAACCAGGTGTTTCAACAATTTTACAGGTTCTGGTCTCTATACAGGGTCTAATCCTGAATTCAGAGCCATACTACAATGAGCCTGGATTTGCCCATCTAATGGGTTCTAAAGAGGGTGCGTTTAATTCCTTGCATTACAATGAGAACACATTCATCCTATCATTGAGGACAATGGAGTATATCATGAGAAGACCTCCAAAGAATTTTGAGGACTTCGTGGCTGGGCAATTCTGCAGTCGAGCTCATGATATTCTGGTGGCATGCAAAGCATACATAGATGGTGCTCAAGTAGGTTGTTTGACCAAAGATGGGGTGCAGGATGTTGATCAAGGTGACAAGAGCTGCTCCAATCAGTTTAGGACATCTTTGTCTGCACATGTGGACATGCTTGTTAGAGAGTTTACGAAAATTGGAGCTAAGGACTGTGACAAAGTATTTCCATCAGCAAAGGAGAAAACTTCGGTGGATGAAATACCCGAGGTTGCTGCAATTTCTGATAAAAAATTTCGAGACATGATGAAGTCTTAG 2091 0.4003 MDPGLVEIPPPVTSNTPNSMKPEEAIRHDVIDIDDDNDSTELVLVGDKVGKIDKGKAIATVHDDYGDHQNMELLDDVMDKSGSGDGHNADSSCDDDDYSDLFSDDYIDADQSALIQTHFDNVDIPPGIEVPIPWMAEYDLGLKKTNYHSLSPWSHTMSGAYVSQVTDSSQHLLTLEPSNLETQGPSAGNSNLQVKMNTIIQHPSGVELSSPQVNCLSKKKSNASKHRRHKPKMAFGMKSSKPNLSTGPSESKKKPNIFYAPASHIFVDNFEAKKLQNASEVPHWGHFGNSKTADGSKTLNHSNFVGSSFHFPGVESFMWAKKDFHFQPLSSYTVKSSFGSPFVPFSAAPEPLFDNSWVHYPGRDGNNGAAAESAVATISDEARDEILRKFQNFKQFDTIENPSDHYFLNASCSMKQVSQKCAKRLQEEWKSLEKDLPDSIFVRVYESRIDLLRAVIIGAEGTPYHDGLFFFDFFFPSSYPTVPPDVHYHSCGLRLNPNLYSSGKVCLSLLNTWSGHENEKWQPGVSTILQVLVSIQGLILNSEPYYNEPGFAHLMGSKEGAFNSLHYNENTFILSLRTMEYIMRRPPKNFEDFVAGQFCSRAHDILVACKAYIDGAQVGCLTKDGVQDVDQGDKSCSNQFRTSLSAHVDMLVREFTKIGAKDCDKVFPSAKEKTSVDEIPEVAAISDKKFRDMMKS* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1243 696 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 15 672 - -
Vra2g1243 696 Gene3D Ubiquitin Conjugating Enzyme 379 663 IPR016135 -
Vra2g1243 696 CDD UBCc 423 570 IPR000608 -
Vra2g1243 696 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 420 580 IPR000608 -
Vra2g1243 696 MobiDBLite consensus disorder prediction 220 235 - -
Vra2g1243 696 Pfam Ubiquitin-conjugating enzyme 424 548 IPR000608 -
Vra2g1243 696 SMART ubc_7 423 580 - -
Vra2g1243 696 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39-RELATED 15 672 - -
Vra2g1243 696 MobiDBLite consensus disorder prediction 1 23 - -
Vra2g1243 696 MobiDBLite consensus disorder prediction 217 253 - -
Vra2g1243 696 SUPERFAMILY UBC-like 410 587 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1243 Vra-Chr2 17727588 17735245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1243 376 670 Miscellaneous Gene Families AT2G33770 45.118 1.61e-79 270