Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1241 ATGGAATCTAAACACTTTGACTCCAATGGGGAAGTCTCTCTAAAGCAAAAATCAAAATCCATTTCAGCTGAGCCAACAGTCTCTACTTGTGAAAATGATTGCTTTGATTGCAATATTTGTTTGGAAGCAGCATATGACCCTGTGGTTACACTCTGTGGTCACCTTTACTGTTGGCCATGCATATACAAGTGGCTGCATGTTCAAAACTCATCTGTTGAACCAGACCAGCAGCAGACATGCCCAGTTTGTAAATCTAAGATCTCTCAAACCTCAGTAGTCCCTCTCTATGGCCGTGGAACATCAAATTCAGAATCAAAAGCCAAGAAACTCCAGATGAGTCTTGGAATACCTCACAGGCCACCTCCTTACAACTTGAATGATTTGTTAACTTCTTCTGCTCGTGCACCAGCACATTCTGGCCACCAATTTCGTCCAAGTTATTTCCAGTCACAGCCAAGACCATTTCATTATCAGCAGTACTTCCCTCACCTCTATGAAAGCTATGGCACCAATGGATTGCCGTATCTTGGAGGTGCTGCTATGACTAGCTTCTTTAATCCTATGATTGATGGAAGTTTATGTTCCTGCTGTGGTGCCAAATGA 603 0.4279 MESKHFDSNGEVSLKQKSKSISAEPTVSTCENDCFDCNICLEAAYDPVVTLCGHLYCWPCIYKWLHVQNSSVEPDQQQTCPVCKSKISQTSVVPLYGRGTSNSESKAKKLQMSLGIPHRPPPYNLNDLLTSSARAPAHSGHQFRPSYFQSQPRPFHYQQYFPHLYESYGTNGLPYLGGAAMTSFFNPMIDGSLCSCCGAK* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1241 200 SMART ring_2 37 83 IPR001841 -
Vra2g1241 200 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Vra2g1241 200 SUPERFAMILY RING/U-box 33 96 - -
Vra2g1241 200 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3-LIKE 3 190 - -
Vra2g1241 200 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 190 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vra2g1241 200 ProSiteProfiles Zinc finger RING-type profile. 37 84 IPR001841 -
Vra2g1241 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 131 IPR013083 -
Vra2g1241 200 Pfam Zinc finger, C3HC4 type (RING finger) 37 83 IPR018957 GO:0046872
Vra2g1241 200 CDD RING-HC_AtRMA_like 35 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1241 Vra-Chr2 17676169 17678517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1241 2 189 C3H Transcription Factor Family AT4G27470 46.114 2.33e-45 149