Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1239 ATGTTCCCCTTGCTTCCAAATACAAACAAAAAGCAAGCCAGCTTTGAAACCTGTGTTCAAAACAAACACATCATGGACCAGAACATCACAGTTCCAAGAATTCATGCATTCTCATCACCACCTTCTCCTCCCTTGTCTTCCTGCATCATTGCCCTTTCCATAGCCACACTGATTTTCATGTTCTTCTACGTTTTCTCACCCATTTTTTCAGCAGCCATTCTTTTAGCCCTTTGCATCATCGCCCTCCTCTTTTGCACCTTCACGCAGGATCAAACATTCGCCTTTCACGCACACACTACTCCACCCAAAAACCAGAGGCTGGTCAAAATTTTCAATAACCTTTTCTGGGTCGTTGAAGAGAAAAGAAGTGGCAAAACGCAACAAGTAATGAAGCTGCTTGGATCTATCGTATGCTTCCAAAACCAACCATTTCTGTCAGGGAGTGAATGTGCAATTTGCTTAGAAGAGTTGAAGAATGGAGAAGAGTGTGTTGTGTTTTCAGTTTGTGGACACATCTTTCATTTTGATTGTATCAAACACTGGTTAGAGGAAAAACCGACTTGTCCAAATTGTCGTCACTGTGTGGCATCATCAGCCACCATGATGAAAACAACAAGCATGGAGTTCTTGGAGAATTTAGTTGAGTGA 648 0.4213 MFPLLPNTNKKQASFETCVQNKHIMDQNITVPRIHAFSSPPSPPLSSCIIALSIATLIFMFFYVFSPIFSAAILLALCIIALLFCTFTQDQTFAFHAHTTPPKNQRLVKIFNNLFWVVEEKRSGKTQQVMKLLGSIVCFQNQPFLSGSECAICLEELKNGEECVVFSVCGHIFHFDCIKHWLEEKPTCPNCRHCVASSATMMKTTSMEFLENLVE* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1239 215 Pfam Ring finger domain 149 192 IPR001841 -
Vra2g1239 215 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 5 91 - -
Vra2g1239 215 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 94 199 - -
Vra2g1239 215 SMART ring_2 150 191 IPR001841 -
Vra2g1239 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 208 IPR013083 -
Vra2g1239 215 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
Vra2g1239 215 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 5 91 - -
Vra2g1239 215 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 94 199 - -
Vra2g1239 215 SUPERFAMILY RING/U-box 139 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1239 Vra-Chr2 17548148 17549283 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1239 131 197 C3H Transcription Factor Family AT1G53820 44.928 1.43e-12 63.5