Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1233 ATGAAGGATTCTTCTGGGTATAAGGTTTTCAGGTCAAGGGCCTTTACTTGTTTTAGTGACCCTTATTCTCCTGAAAAAACCCCTTTTCCGGTGAGGCATTATCACAGGATTAACTTCAAACACCTAATAGACAAGGTTGTGTTTGCTGAAAGAGATCAGCATAAAGATTTCGGGTGTATTGATGAATCTTTTGTTTGTGCTATAGTGGGTGATACGAGTTTGAGGCAATGGTTAGATAATCCTCAACGATCAGTGAATTTCTGTGAATGCTTGAACATATTTAGGCAAATAGTAGAAATTGTTCATGTGGCTCATTCTCAAGGAAATGCTGTTCATAACGTGAGGCCCTCTTGCTTTGTCATGTCATCTTTCAGCCATGCCTCTTCTATGGATCCAGCAACTTGTTCAGATGCTGACTTTGATACTCCAGAAGAAGATTCTGAGATTAAAACTCCAACACTCACACATCAGCAGAGATGTTTGGGAAGTGATGATTTTGTTCCTGCCAAGACTTCAATAGCTTCTTTGTCAAGAGTGGTGTTTGTGCCACATACATCATTAATGGAAGACATAGAAGGAAAGAAGCAATTGCTTGCAATAAAACAAGAACAGGTGATGGAGTTGAGTTGGTATACTACTCCTGAAGAGGTTGCTGGTGCTGTAAGTTCCTGTGCTTCAGACATTTTCCAGCTAGGAGTTCTACTTTTTGAGCTATTCTGTCCTCTCAGCAGAACAGAAGAAAAGAGCAGAACCATGTCAAGCCTAAGAAATAGAGTTCTTCCTCCACAGTTACTTCTAAAGTGGCCTAAAGAAGCTTCGTTTTGCTTATGGTTACTCCATCCTGAACCCAGTCATCGTCCAACAATAGGGGATTTGTTGCAGAGTGAATTTCTTAACAAACCAAGACATGATGTAGAAGAGTGTGAAGCAACCGTACAACTCAGAGAAAGGATACATAACCAGGAGTTGTTGCTAGAATTTCTTCTGTTGATTCAGCAGAAAAAAGTGGAAGCTGCTGAGAAGTTGCAACATTCTATTACATTTCTGTGTTCAGACATTGCAGAAGTGACCAAGCAGAAAACTGAATTTATGGAGATATCTGGCACTGCATTAGCGAGTGATGATTGTTCAACATCCACTGTAGTTGTTGATAATGATGAGAATTCTACCAGTCCAAGAACCAGAAAACGAGTCAGAACTGAGACGTGTGTTGATGACACTGCAGAATGTGATGATCAGAAAAATGAGGAAAGTAGACTTTCCAAGAGTCCACAGTTTTTGAAGAACTTCAAGAAACTAGAAAATGCATACTTTTTGACACGATCAAAATCATCGTATTCCTCAGGGAAACATGTGGTTGAACATACACCTGTATCTGGTAATGGAAGAGGGTCTTTTGTTGTCACTGAAAGGAGTTGTGTCAGTAAAGTAGCATCAAAAGAAGAATTCAGGGAAGGAAAAATTCCTTGGACAAATCCTTTCCTTGAGGGTTTGCAAAAGTACCTATCTTTCAGTAGGTTAAAGGTTAAGGCTGAGCTGAAACAAGGGGATCTTTTGCACTCTTCCAACCTGGTATGCTCAGTCAGTTTTGATCGTGATGCAGAGTTTTTTGCCACTGCAGGAGTGAATAAGAAGATTAAAGTGTTTGAATATGACTCAACCATAAATGAGGATCTTGATATCCAATACCCAGTGGTGGAGATGGTTAGCAGATCAACATTGAGTAGTACTTGCTGGAATACTTACGTCAAAAGTCAAATTGCTTCAAGTAACTTTGAAGGTGTTGTACAGCTATGGGATGTGACAACAAGTCAAGTGCAGTCTGAGATGAGGGAGCATAATCAAAGGGCATGGTCTATTGATTTCTCTTCAGCAGACCCCACATTACTAGCAAGCGCAAGTGATGACGGTTCTGTTAAGCTGTGGACTATCAATCAGGGAGTTAGTGTTGGTACCATCAAAACAAAGGCAAACGTGTGTTGTGTTCAGTTTCCCCTTGATTTTGCGCATTTCCTTGCATTTGGTTCAGCAGATCATCAGATATATTACTATGATCTTCGCAACATAAAAGAGCCTCTTTGTACATTAGTTGGACATAATAGGACAGTGAGCTACATCAAGTTTGTAGACTCCATCAGCCTCGTCTCTGCATCAACAGATAACACTTTGAAGCTTTGGGATTTGTCCAATTCTGCTTCTCGTGTTATAGATTCACCGCTTCAATCATTCACCGGTCACAAGAATATTAAGAACTTCGTGGGGTTGTCTGTATCAGACGGTTACATTGCTACTGGTTCTGAGACAAACGAGGTGTTCATATATCACAAGGCTTTCCCCATGCCAGCATTGTCCTTCAAATTTTATAGTAGTGACCAATTGCCTGTGGATGAAGCGAATGATCCTTCTGAGTTCATCACTTCTGTTTGTTGGCGTGGTCAGTCGACAACCTTAATTGCTGCAAACTCCACAGGGAATGTCAAAATTCTGCAGATGGTTTAA 2499 0.4054 MKDSSGYKVFRSRAFTCFSDPYSPEKTPFPVRHYHRINFKHLIDKVVFAERDQHKDFGCIDESFVCAIVGDTSLRQWLDNPQRSVNFCECLNIFRQIVEIVHVAHSQGNAVHNVRPSCFVMSSFSHASSMDPATCSDADFDTPEEDSEIKTPTLTHQQRCLGSDDFVPAKTSIASLSRVVFVPHTSLMEDIEGKKQLLAIKQEQVMELSWYTTPEEVAGAVSSCASDIFQLGVLLFELFCPLSRTEEKSRTMSSLRNRVLPPQLLLKWPKEASFCLWLLHPEPSHRPTIGDLLQSEFLNKPRHDVEECEATVQLRERIHNQELLLEFLLLIQQKKVEAAEKLQHSITFLCSDIAEVTKQKTEFMEISGTALASDDCSTSTVVVDNDENSTSPRTRKRVRTETCVDDTAECDDQKNEESRLSKSPQFLKNFKKLENAYFLTRSKSSYSSGKHVVEHTPVSGNGRGSFVVTERSCVSKVASKEEFREGKIPWTNPFLEGLQKYLSFSRLKVKAELKQGDLLHSSNLVCSVSFDRDAEFFATAGVNKKIKVFEYDSTINEDLDIQYPVVEMVSRSTLSSTCWNTYVKSQIASSNFEGVVQLWDVTTSQVQSEMREHNQRAWSIDFSSADPTLLASASDDGSVKLWTINQGVSVGTIKTKANVCCVQFPLDFAHFLAFGSADHQIYYYDLRNIKEPLCTLVGHNRTVSYIKFVDSISLVSASTDNTLKLWDLSNSASRVIDSPLQSFTGHKNIKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSFKFYSSDQLPVDEANDPSEFITSVCWRGQSTTLIAANSTGNVKILQMV* 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1233 832 PRINTS G protein beta WD-40 repeat signature 587 601 IPR020472 -
Vra2g1233 832 PRINTS G protein beta WD-40 repeat signature 630 644 IPR020472 -
Vra2g1233 832 PRINTS G protein beta WD-40 repeat signature 714 728 IPR020472 -
Vra2g1233 832 PANTHER PROTEIN SPA1-RELATED 2 66 832 IPR044630 GO:0009640
Vra2g1233 832 Gene3D Transferase(Phosphotransferase) domain 1 70 309 - -
Vra2g1233 832 Gene3D - 495 832 IPR015943 GO:0005515
Vra2g1233 832 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 610 647 - -
Vra2g1233 832 ProSiteProfiles Trp-Asp (WD) repeats profile. 610 652 IPR001680 GO:0005515
Vra2g1233 832 ProSitePatterns Trp-Asp (WD) repeats signature. 714 728 IPR019775 -
Vra2g1233 832 Pfam WD domain, G-beta repeat 607 642 IPR001680 GO:0005515
Vra2g1233 832 Pfam WD domain, G-beta repeat 691 727 IPR001680 GO:0005515
Vra2g1233 832 SUPERFAMILY Protein kinase-like (PK-like) 65 307 IPR011009 -
Vra2g1233 832 ProSiteProfiles Trp-Asp (WD) repeats profile. 696 736 IPR001680 GO:0005515
Vra2g1233 832 SMART WD40_4 689 727 IPR001680 GO:0005515
Vra2g1233 832 SMART WD40_4 791 830 IPR001680 GO:0005515
Vra2g1233 832 SMART WD40_4 736 775 IPR001680 GO:0005515
Vra2g1233 832 SMART WD40_4 646 685 IPR001680 GO:0005515
Vra2g1233 832 SMART WD40_4 515 550 IPR001680 GO:0005515
Vra2g1233 832 SMART WD40_4 561 600 IPR001680 GO:0005515
Vra2g1233 832 SMART WD40_4 603 643 IPR001680 GO:0005515
Vra2g1233 832 PANTHER PROTEIN SPA1-RELATED 3 66 832 - -
Vra2g1233 832 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 696 730 - -
Vra2g1233 832 SUPERFAMILY WD40 repeat-like 520 830 IPR036322 GO:0005515
Vra2g1233 832 ProSiteProfiles Protein kinase domain profile. 1 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1233 Vra-Chr2 17364715 17382434 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1233 596 774 Miscellaneous Gene Families AT5G08390 27.624 1.18e-10 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Vra2g1233 WD40 0.025 CL0186