Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1099 ATGGACTATGTCAGCAAGTGGGTGAAGGTAGCAGCATGCCAAAAGAATGACGCCAACATTATCATTAAATTCCTTAAAAGGAATATTTTCTCAAGGTTTAGGGTGCCTCGAATTCTGATTAGTGATGGTGGATCTCACTACTGCAACTCTCAGCTTGAAAAGTTACTAAAGCATTATGAAGTGAGGCACAAGGTCGCTTCCGCATACCATCCTCAGACCAACAGCCAAGCCGAGGTTTCAAATAGAGAGATTAAGAGGATTCTTGAGAAAACAGTTTCTTCTTCAAGAAAAGACTGGTCAACAAAGTTGGATGATGCTTTATGGGCCTATGGGACTGCACTGAAGACACCTGTAGGGATGAATCCGTTCCAGCTTGTCTATGGAAAAGTCTGTCATCTGCCAGTGGAGATGGAACATAAGGCTTACTGGGCTTTAAAGTTTATGAACTTTGATTCTACCTTGTCTGCAGAGAAGAGGAAGCTACAACTTCAAGAGTTGAAAGAGATAAGACTAACAGCCTATGACAACTCCAAGAATTACAAGGAAAAGGTCAAGTTGTATCATGACAAGAAGCTTCTAAAGAGAGAATTTCAATCTGGTCAACAAGTTCTCCTCTTCAATTCTAGATTCAAGATCCTTCAAGGCAAGTTGAAGTCAAAGTGGTCTGGACCTTTCACCATCAAGGAAGTAAAACCTCATGGAGCCATTGAATTGGTTGATCCTTCCTCATATGATCCAGAGAGAAGTTGGGTGGTAAATGGTCAGCGTTTGAAACACTACTTGGGTGAGCCAGCTTGTGTAATTCAGCCAGACTGCATTCAACCATCATGTTTCACACCAAGATTTCTCTTGGGAAAATCCAAGAAAGAAAAAAAGTTGAAGCCAAAAATTGATGTGCAGAATCAGGTGACCCCTCTTCCCGAGCTTATTGTCGAGCCCACCAATGCTAGATCAATGCCCTTTGTGGGAACACACGAGTACCTGGCACCTGAAATCATCAAAGGTGAAGGACATGGCAGTGCTGTAGACTGGTGGACATTTGGGATATTCTTGTATGAGCTATTGTTCGGAAGAACGCCGTTCAAAGGTCCGGCGAACCGTGTAACGCTATTCAATGTCGTTGGACAGCCCTTGAAATTTCCAGAATCTCCCTCTGTGAGCTTTGCTGCCAGGGACTTGATCTGA 1185 0.4321 MDYVSKWVKVAACQKNDANIIIKFLKRNIFSRFRVPRILISDGGSHYCNSQLEKLLKHYEVRHKVASAYHPQTNSQAEVSNREIKRILEKTVSSSRKDWSTKLDDALWAYGTALKTPVGMNPFQLVYGKVCHLPVEMEHKAYWALKFMNFDSTLSAEKRKLQLQELKEIRLTAYDNSKNYKEKVKLYHDKKLLKREFQSGQQVLLFNSRFKILQGKLKSKWSGPFTIKEVKPHGAIELVDPSSYDPERSWVVNGQRLKHYLGEPACVIQPDCIQPSCFTPRFLLGKSKKEKKLKPKIDVQNQVTPLPELIVEPTNARSMPFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGPANRVTLFNVVGQPLKFPESPSVSFAARDLI* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1099 394 SUPERFAMILY Ribonuclease H-like 1 136 IPR012337 -
Vra2g1099 394 ProSiteProfiles Integrase catalytic domain profile. 1 130 IPR001584 GO:0015074
Vra2g1099 394 Pfam Integrase core domain 2 71 IPR001584 GO:0015074
Vra2g1099 394 ProSiteProfiles Protein kinase domain profile. 112 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1099 394 SMART serkin_6 123 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1099 394 Gene3D - 1 179 IPR036397 GO:0003676
Vra2g1099 394 Pfam Protein kinase domain 319 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1099 394 SUPERFAMILY Protein kinase-like (PK-like) 314 394 IPR011009 -
Vra2g1099 394 PANTHER FLIPPASE KINASE 1-RELATED 263 394 - -
Vra2g1099 394 Gene3D Transferase(Phosphotransferase) domain 1 316 394 - -
Vra2g1099 394 PANTHER SERINE/THREONINE-PROTEIN KINASE D6PKL3 263 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1099 Vra-Chr2 13334994 13336974 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1099 260 394 AGC Kinase Gene Family AT5G47750 75.177 7.76e-67 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vra2g1099 Pkinase 1.2e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1099 - - vra:106780632 797.734