Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0673 ATGGATCCTTCTACTGGACAACACCAGCAAATGTCTAACCAGTCATTGGAGAACATGTTGGCATGTTCAAAAGCACAGCAGGAGAGGAAGCCAAGGCCTCAGCCAGAACAAGCTCTAAAGTGTCCCAGATGTGACTCCACCAACACCAAATTTTGTTACTACAACAATTACAGCCTTTCCCAGCCAAGGTACTTCTGCAAGTCTTGCAGAAGATATTGGACCAAAGGAGGAACACTGAGGAATGTTCCAGTGGGAGGAGGGTGCAGGAAGAACAAGAGGTCATCATCATCATCTTCATCTTCAAAGAGAATCCAAGATCAAGGATTCACACCCAATCCAAACAACCCACTCACTGGTTTTCCTTCCTTGTCTTATGACTCCAGCGACCTCACTCTTGCACTAGCAAGGCTGCAAAAGCAGTCATGTGGGCAATTGGGTTATGATGAGCATGACTTTTCAATTTTGGGGAATCCCACAAGCACCCCATGTGATATCCTTGGCAACCCTGGAATGCACCACTCTTCCACGAACCCAGGTTTCTTGGATTCTCTTAGAAGTGGGTTCCTTGGAACACAAAGCAATGTTCAGAATCTGTACTATGGATATGGGAATGGGGACATGGGGGAGGTGGACAATGGCAATGCTTGTGGTAATGGGGTTAGTGGAGAGATGCTGCTGCCTTATGATCAAGAAATGAGTGTTGCCACCACCCAAGCAGTCACAGTCACCACCATGAAACAAGAACTTTGCAATGCAAGAGAGCAAAGTGAGAGTAGGGTGTTGTGGGGTTTCCCATGGCAACTCAATGGAGACACCAACATGGCTGAGCTTGACTCAGGAAGGGCTAACTGGAATGCTCTCACCTCATCTTGGCATGGACTTCTCAATAGTCCTCTAATGTAG 903 0.4707 MDPSTGQHQQMSNQSLENMLACSKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSSSKRIQDQGFTPNPNNPLTGFPSLSYDSSDLTLALARLQKQSCGQLGYDEHDFSILGNPTSTPCDILGNPGMHHSSTNPGFLDSLRSGFLGTQSNVQNLYYGYGNGDMGEVDNGNACGNGVSGEMLLPYDQEMSVATTQAVTVTTMKQELCNAREQSESRVLWGFPWQLNGDTNMAELDSGRANWNALTSSWHGLLNSPLM* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0673 300 MobiDBLite consensus disorder prediction 1 40 - -
Vra2g0673 300 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Vra2g0673 300 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 299 IPR045174 GO:0003700|GO:0006355
Vra2g0673 300 MobiDBLite consensus disorder prediction 90 121 - -
Vra2g0673 300 MobiDBLite consensus disorder prediction 1 22 - -
Vra2g0673 300 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Vra2g0673 300 MobiDBLite consensus disorder prediction 83 121 - -
Vra2g0673 300 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 7 299 - -
Vra2g0673 300 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0673 Vra-Chr2 5642192 5644587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0673 1 300 C2C2-Dof Transcription Factor Family AT2G28510 39.634 5.44e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra2g0673 zf-Dof 6.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0673 - - gmx:100799737 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0673 2 5642192 5644587 Vra2g0673 2 5642192 5644587 ECH
Vra4g0295 4 5645714 5647463 Vra2g0673 2 5642192 5644587 PCT