Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0610 ATGGTTTTCTCCTCTATTCCAGTCTTTGTAGATCCTCCCAATTGGCACCAGCAAACCAACCATCCTCAGGCCAATGGCAGTGACAACACTCAGCTTCTTCCACCTTTGCCACCGCAGCAGACTCATGTGGGAGCTTCTGTGGGATCAATCAGGCCAGGTTCCATGGCTGATCGAGCTAGGCTGGCTAAGATACCTCCTCCTGAAGCAGCTCTCAAGTGTCCACGTTGTGAATCAACCAACACTAAATTTTGCTATTTCAACAACTACAGCCTCTCTCAACCACGCCACTTCTGCAAGACTTGCAGGCGTTATTGGACAAGAGGGGGTGCTCTAAGAAACGTTCCTGTGGGTGGAGGCTGCCGAAGGAACAAGAAGAACAAAAGGAGTCGCTCTAAGTCTCCAGCATCATCTGACAAACAAACACTGTCTGGTTCTTCTGGTGCACTCCCCTCTGCTGGAAACACTCACGAGCTTATAGGCCAGTTGCCGCAACCACCGAACCTTCCCTTCATGGCATCACTCCAGAACCTGAACCGTTATGCTGTCGGAAACATGGGTCTCGGGTTGCGTGAGATTCACGGACAGAACGATCACATGGGTTTTCAAATTGGTGGCAGCGGTAATTCCTCTGCTGGTGGAGGAATGGATCAGTGGCGCTTGCAGCAGATTCCTTTCTTTAATGGTTTTGAATCTTCTTCAGCCGGTTCATACCATTTTCAAAATGAAAGTATTGAAACACCTTCTGGTTTAGTTGGAGATTTAGCAACGAATTCTAGGGTTTCTCAGATGCCATCAGTTAAAATGGAAGAAAGTGGAGCTTTGAATTTGTCAAGATCACCACTGAACGTCTCAGAAAATAACCACTACTATTCATGGACTGATATGTCAGGTCTTTCCTCTTCTTCTGCTAGTCATCTCTTGTAA 924 0.4719 MVFSSIPVFVDPPNWHQQTNHPQANGSDNTQLLPPLPPQQTHVGASVGSIRPGSMADRARLAKIPPPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPASSDKQTLSGSSGALPSAGNTHELIGQLPQPPNLPFMASLQNLNRYAVGNMGLGLREIHGQNDHMGFQIGGSGNSSAGGGMDQWRLQQIPFFNGFESSSAGSYHFQNESIETPSGLVGDLATNSRVSQMPSVKMEESGALNLSRSPLNVSENNHYYSWTDMSGLSSSSASHLL* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0610 307 MobiDBLite consensus disorder prediction 13 43 - -
Vra2g0610 307 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 9 304 - -
Vra2g0610 307 ProSiteProfiles Zinc finger Dof-type profile. 71 125 IPR003851 GO:0003677|GO:0006355
Vra2g0610 307 ProSitePatterns Zinc finger Dof-type signature. 73 109 IPR003851 GO:0003677|GO:0006355
Vra2g0610 307 MobiDBLite consensus disorder prediction 115 164 - -
Vra2g0610 307 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 9 304 IPR045174 GO:0003700|GO:0006355
Vra2g0610 307 Pfam Dof domain, zinc finger 70 125 IPR003851 GO:0003677|GO:0006355
Vra2g0610 307 MobiDBLite consensus disorder prediction 135 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0610 Vra-Chr2 4815526 4817229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0610 37 306 C2C2-Dof Transcription Factor Family AT3G55370 43.667 3.11e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra2g0610 zf-Dof 1.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0610 - - gmx:100816635 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0610 2 4815526 4817229 Vra2g0610 2 4815526 4817229 ECH
Vra4g0243 4 5112953 5114709 Vra2g0610 2 4815526 4817229 PCT