Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0373 ATGAAGATCCAGTGTGATGTCTGTCACAAAGAAGTCGCCTCCTTCTTCTGCCCTTCAGACGAAGCAGCTCTCTGCCATGCCTGTGATCGCACCATCCACCATGCCAACAAGCTCGCTCACAAACACAAACGCCTCTCTCTCTGCCACCCCACCTCCATACCCGCCACTCTCTGTGATATCTGTCATGAGAAGCGCGCTTACGTCTTCTGCAGAGAAGACAGAGCTCTACTTTGCAGACAATGTGATGTTTCCATCCATGATGTCAACGAACATACCAAGACGCACGACAGGTTTCTTCTCACTGGAATAACGCTTGAAGAAAAAACAAGAACAACCTCAACCTCGTCAACCTCGAACGAAAACATCGATTCTTTTGGTTCTTCTTATAACTCGAGTTCGGTTTCAACAAGCAGCTTATCTGAGTACTTGATTCAGACCATTCCCGGTTACTGCATGGAAGACCTTTTAGATGCTTCGTTTCCTGCATCAAATGCTTTCTCTAAGGATTATGAGTTTCCGAATGAAGATGTTCAAGTTAGCATGTGCTCTTTCCCACTCCAAACTCAATTTAGCACAGCTTCGAATCTTCATCCTGAAATGCCAAAAGCCAAAGCTGGTGAAGGATACTCAGATTGGATTCATAATTCTGATTCCACAGCCTACAGAGTTCCCTCGATTTCTCCTCCTTTAGTAAAAAAAATCAAACGCTCTCGTTGA 717 0.4491 MKIQCDVCHKEVASFFCPSDEAALCHACDRTIHHANKLAHKHKRLSLCHPTSIPATLCDICHEKRAYVFCREDRALLCRQCDVSIHDVNEHTKTHDRFLLTGITLEEKTRTTSTSSTSNENIDSFGSSYNSSSVSTSSLSEYLIQTIPGYCMEDLLDASFPASNAFSKDYEFPNEDVQVSMCSFPLQTQFSTASNLHPEMPKAKAGEGYSDWIHNSDSTAYRVPSISPPLVKKIKRSR* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0373 238 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 121 - -
Vra2g0373 238 PANTHER B-BOX ZINC FINGER PROTEIN 22 118 173 - -
Vra2g0373 238 PANTHER B-BOX ZINC FINGER PROTEIN 20 118 173 - -
Vra2g0373 238 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 121 - -
Vra2g0373 238 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vra2g0373 238 CDD Bbox1_BBX-like 57 100 - -
Vra2g0373 238 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vra2g0373 238 SMART bboxneu5 53 100 IPR000315 GO:0008270
Vra2g0373 238 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Vra2g0373 238 Gene3D Classic Zinc Finger 1 99 - -
Vra2g0373 238 CDD Bbox1_BBX-like 5 47 - -
Vra2g0373 238 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270
Vra2g0373 238 Pfam B-box zinc finger 4 45 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0373 Vra-Chr2 2891701 2892970 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vra2g0373 zf-B_box 1.2e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0373 2 2891701 2892970 Vra2g0373 2 2891701 2892970 ECH
Vra2g0373 2 2891701 2892970 Vra11g0756 11 6151563 6153584 ECH