Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1104 ATGTCAAATAAGGATCCGGGTATTAGGCTCTTTGGCAGGAAGATTCCGTTGCCGGAATCTCAGATTCCGGCCAGTTCTCAGATGGGATATCAGATTCAGGCCAACTCTGCAACCATGAATGCTTACAATGGCTTAAAGAAAAAAGAAGTTGAAATACCCTGTACTGAAAACTCTGAGCAACCAGAGAATTATTCTGATTCAACGGATAGAAAACAAGAGACACTACATAATGATCGGCAGGAAAATGAGTCAAAAGTAAATTCCAAAACAGTGGAAAATAATACAGAGAGTAGCAGTACAGATCAAGATAAAATCTTCAAGAAACCAGACAAGATTCTGCATTGTCCTCGATGCAACAGTTTAGACACCAAATTCTGTTATTTCAATAACTACAATGTGAATCAACCTCGGCATTTCTGCAAGAACTGCCAAAGGTATTGGACTGCAGGTGGAACCATGAGAAATGTTCCAGTGGGTGCGGGGAGACGAAAGAACAAGCACCTAGCTTCTCAATACCGGCACATTATTGTATCTTGTGACGGAATTCCAACTACAAGTGACTCTTCTTGTCACCAACTTGCCACAACACTTCAATCTGCTGCTGTTTTCAGGTCTTCAACAGATAATGGTACTGTGTTGAAATTTTGTCCGGATGCCCCTCCTCTTTGTGAATCCATGGAGTCAATGCTTAATCTTAAAGAACAAAATCGAAGTGCTGATGAAAATACTGTCAATTATGCAGAAAAAGGGGAGGAGGAAGTATCCTTATGTGGATCATCATCTATGACCAATGCTTGCACTCCAAGAAACAATTCAACTGAACCAACTGCATCAAAACCTATGCAGTGTTATCCTGTTCCTCCGTGGATATTCCCTTGGAATCCAGATTGGAACAATGTTGCTTCCACTGCATCAGTTCACCCCTCTTCACTACAAATGTGTAACCCTTATAACAGTGCCGACCCTGCTTCAATGCAGTGGTGTCCTACACCGATCATGGCAGTTCCAACAATCTGCCCACCAAGCTTTCCCTTGCAATTTGTTCCTGGATCATACTGGAGTGGACCACCTGTGTATGGTGGTGGAACAGGAGCTGCTTCAATGGGTTTCAATGCCTGCCTTTCACCTACTTCCTCTACCAGTAATAGCTGCTGCTCAGGCAACGGCTCCCCAACACTTGGCAAACACACAAGAGACAACCTTTCAACAGATGAAGAAAAATCAGACATGTGTGTCTTGGCCTCATCAGGAACCAACCCTGAATGTGTACCAGAAGGTACTATTTCAAAAAGGGCAAAGGCTAAAGAAGGCAAAGACCGTGTCTTAGGTGTGTCTCAAATCTTGGAAGCTAACCCTGCAGCTATTTCTCGTGCTCATGCATTTCAAGAGGGCATGTGA 1398 0.4335 MSNKDPGIRLFGRKIPLPESQIPASSQMGYQIQANSATMNAYNGLKKKEVEIPCTENSEQPENYSDSTDRKQETLHNDRQENESKVNSKTVENNTESSSTDQDKIFKKPDKILHCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQYRHIIVSCDGIPTTSDSSCHQLATTLQSAAVFRSSTDNGTVLKFCPDAPPLCESMESMLNLKEQNRSADENTVNYAEKGEEEVSLCGSSSMTNACTPRNNSTEPTASKPMQCYPVPPWIFPWNPDWNNVASTASVHPSSLQMCNPYNSADPASMQWCPTPIMAVPTICPPSFPLQFVPGSYWSGPPVYGGGTGAASMGFNACLSPTSSTSNSCCSGNGSPTLGKHTRDNLSTDEEKSDMCVLASSGTNPECVPEGTISKRAKAKEGKDRVLGVSQILEANPAAISRAHAFQEGM* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1104 465 MobiDBLite consensus disorder prediction 385 408 - -
Vra1g1104 465 ProSitePatterns Zinc finger Dof-type signature. 115 151 IPR003851 GO:0003677|GO:0006355
Vra1g1104 465 MobiDBLite consensus disorder prediction 63 86 - -
Vra1g1104 465 Pfam Dof domain, zinc finger 110 167 IPR003851 GO:0003677|GO:0006355
Vra1g1104 465 PANTHER CYCLIC DOF FACTOR 3-LIKE 1 463 - -
Vra1g1104 465 PANTHER CYCLIC DOF FACTOR 2 1 463 IPR045174 GO:0003700|GO:0006355
Vra1g1104 465 MobiDBLite consensus disorder prediction 1 26 - -
Vra1g1104 465 ProSiteProfiles Zinc finger Dof-type profile. 113 167 IPR003851 GO:0003677|GO:0006355
Vra1g1104 465 MobiDBLite consensus disorder prediction 52 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1104 Vra-Chr1 13549856 13552942 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1104 5 463 C2C2-Dof Transcription Factor Family AT5G39660 31.048 7.18e-51 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra1g1104 zf-Dof 4.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1104 - - pvu:PHAVU_004G054000g 735.717