Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0926 ATGTTTCCTTTCCAACGAGGCAATGAGCTGGTTATCCAGTTTTCTAATAGTCCCCACCATCACCAGCAACACGAAATCTCCCAACAAGATCTGATTCTGGATGATTATGCTTCACTGGATGATAATCTTTCTGGGAAAAACTTCTCCAGAACCCAATCAGAGAATCTCTTCTATGAGCCAAATAAAAAGAATCATGACTCTAACGAACATATGAAGAAGATGATTCACAAGGAGATCGAAAGGCAAAGGAGACAAGAAATGGCTACCTGCTATGCCTCTCTCAGATCCCTTCTCCCTCTTCAGTTCATCAAGGGAAAGCGTTCAATATCTGACCACATGAACGAGGCAGTGAATTACATAAAGCACATGCAGAACAATATCAAAGAGCTTGTTGCCAAGAGAGATGAACTGAAGAAACTTTCCAACCACAGCAATATGGAAAATAGCCATGAGGGTTTGCATACATCTTGCAACTTTACTGTCCATGAGAATAATGATATTATAGGAATCGAAATCACCAGTGGCTTCATTGAGGAAAGGCCTAAAGTTTCAAAGTTACTGCAGTTACTGATTCAAGAAGGTCTTGAAGTTGTTAGTTGCCTTTCATCCGAAGTCAATGGTAGATTGCTCCACAGTGTGCAGTGTGAGGTAAACAGTTCCAACTGTGTAGATCTATCTGAGCTGAGAAGGAAAATTTCCAAAGCATTTCCAGCATTTAGATGTTCTGACTAA 732 0.4044 MFPFQRGNELVIQFSNSPHHHQQHEISQQDLILDDYASLDDNLSGKNFSRTQSENLFYEPNKKNHDSNEHMKKMIHKEIERQRRQEMATCYASLRSLLPLQFIKGKRSISDHMNEAVNYIKHMQNNIKELVAKRDELKKLSNHSNMENSHEGLHTSCNFTVHENNDIIGIEITSGFIEERPKVSKLLQLLIQEGLEVVSCLSSEVNGRLLHSVQCEVNSSNCVDLSELRRKISKAFPAFRCSD* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0926 243 Pfam Helix-loop-helix DNA-binding domain 72 124 IPR011598 GO:0046983
Vra1g0926 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 123 IPR011598 GO:0046983
Vra1g0926 243 Coils Coil 113 140 - -
Vra1g0926 243 CDD bHLH_AtORG2_like 72 148 - -
Vra1g0926 243 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 241 - -
Vra1g0926 243 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 241 IPR015660 GO:0003700|GO:0006357
Vra1g0926 243 Gene3D - 62 157 IPR036638 GO:0046983
Vra1g0926 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 141 IPR036638 GO:0046983
Vra1g0926 243 SMART finulus 77 129 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0926 Vra-Chr1 10773435 10775398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0926 66 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 43.429 2.07e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra1g0926 HLH 2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0926 - - gmx:100780888 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0926 1 10773435 10775398 Vra1g0926 1 10773435 10775398 ECH
Vra1g0926 1 10773435 10775398 Vra8g2298 8 41243669 41244750 PCT