Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0657 ATGGGGTTATGGAGAAAGGAGACGAGAGAAGAAGCAAAGAAACAGCTATGGCTGGCAGGACCTATGATATTTGTGTGTGTGTTTCAGTTCAGTTTGCAGCTTATATCTACCATGTTTGTAGGTCATTTGGGTGAGATATATTTGGCTGCTGTATCTCTGTCTACTTCAATTGTCAATTCTACTGGTTACAATGTCATGATGGGTCTATCAAGTACATTGGACACATTTTGTGGTCAAGCATATGGAGCAAAGCAGTATCACATGCTTGGTGTGCACACCCAAGGAGCCATGGTGGTTCTTATCCTTGCTAGTATACCAGTCTCCATTATGTGGGTATACTTAGAGCCTATTCTTGTGCTTCTTCATCAAAACAAAGAAGTTGCAAAACTAGCTCAACTATATGCCAGATATTTGATCCCAAGTCTTTCAGCCAATGCTCTTCTTCGATGCATTACTAAGTTCTTACAAACCCAAAACATAGTTTTTCCTATGGTGCTAGCCACTGGTCTTACTAGCTTGTTGCATGTGCTTCTCTGTTGGATTTTGATTCTAAAACTTGACCTTGGTATCAAAGGAGCTGCCATTGCAATGTGCATATCAAATTGGTTTAACACCATAATCTTTGCACTTTACATTCGATTCTCCCCTTCATGCAAACAAACTTGGACTGGTTTCTCCAAGGAATCATTGCATATCATCCCAAAATTTCTCAAACTCGCATTTCCCTCAACAGTCATGGTGTGCTTAGAATCATGGACGTTTGAAATAATTGTGATCTTGTCTGGTGTTCTTGCTAATGGGAAAATGGAAACATCAGTTCTTTCTATATGTCTTAACACGTCTGGTATATTTTGGATGGTACCATTTGGAGTCAGTGCTGCTGGAAGTACAAGGATCTCAAATGAATTAGGAGCTGGTAGACCAAAAGCTGCATATTTAGCAGTTAAAGTCACCATGTTCATGGCCCTTTTGGTGGGGCTCGTAGAATTCTCTGTCCTTATGTCGTTGTGGAAAGTTTGGGGGCGTGTTTTTACCAATGTGCATGAAGTTCTCACACATGTGATTTCCATGATGCCAATTGTTGCAAGTGCTGCCTTTGTAGATTCAATTCAAACAGCTTTTCAAGGTGTTGCCAGAGGATGTGGTTGGCAGAAACTTGGTGCATATATCAATCTAGGATCTTGTTATCTTTTGGGTGTTCCTTTTTCTGTTGTCTCAGCTTTTGTATTCCACTTGAAGGGACAGGGGCTATTTCTAGGGCTTGTATTAGCACTTACTGTGCAAGTGGTGTGTTTTCTTCTTCTCACCTTACAGGCCAATTGGGAGAAAGAAGCAGAAAGGGCAGTTGCAAGAGTAAGAAACAGTGGAGCCAGAGTTGAGGACCAAAATGTTAATGTTGCTTCATAG 1407 0.4094 MGLWRKETREEAKKQLWLAGPMIFVCVFQFSLQLISTMFVGHLGEIYLAAVSLSTSIVNSTGYNVMMGLSSTLDTFCGQAYGAKQYHMLGVHTQGAMVVLILASIPVSIMWVYLEPILVLLHQNKEVAKLAQLYARYLIPSLSANALLRCITKFLQTQNIVFPMVLATGLTSLLHVLLCWILILKLDLGIKGAAIAMCISNWFNTIIFALYIRFSPSCKQTWTGFSKESLHIIPKFLKLAFPSTVMVCLESWTFEIIVILSGVLANGKMETSVLSICLNTSGIFWMVPFGVSAAGSTRISNELGAGRPKAAYLAVKVTMFMALLVGLVEFSVLMSLWKVWGRVFTNVHEVLTHVISMMPIVASAAFVDSIQTAFQGVARGCGWQKLGAYINLGSCYLLGVPFSVVSAFVFHLKGQGLFLGLVLALTVQVVCFLLLTLQANWEKEAERAVARVRNSGARVEDQNVNVAS* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0657 468 TIGRFAM matE: MATE efflux family protein 21 417 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra1g0657 468 CDD MATE_eukaryotic 11 447 IPR045069 GO:0042910|GO:1990961
Vra1g0657 468 Pfam MatE 21 181 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra1g0657 468 Pfam MatE 242 404 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra1g0657 468 PANTHER PROTEIN DETOXIFICATION 3 452 - -
Vra1g0657 468 PANTHER MULTIDRUG RESISTANCE PROTEIN 3 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0657 Vra-Chr1 7746208 7750870 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1324 4 20020001 20022729 Vra1g0657 1 7746208 7750870 ECH
Vra8g2494 8 42889284 42894129 Vra1g0657 1 7746208 7750870 ECH
Vra1g0657 1 7746208 7750870 Vra1g0657 1 7746208 7750870 ECH