Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0656 ATGGCCACATGGAAGGAGACTGTAGAAGAAGCAAAGAAGCAACTGTGGCTGGCAGGTCCAATGGTGTTTGTGTGCGTGTTTCAGTACAGTTTGCAGATGATCTCTCTCATGTTTGTTGGTCATTTGGATGAGTTTCTTCTAGCAGGTGCTTCTTTGGCTGCTTCATTTGTAAATGTAACTGGTTTCAGTATCTTGATAGGCATGTCAAGTGCACTGGACACATTTTGTGGTCAATCATATGGCGCAAAGCAGTATCATATGGTTGGCATACACATGCAGAGAGCCATAGTGGTTACCATGCTTGCTACTATACCAATGTCCATCATTTGGGCATATTTGAGGCCTATTCTGGTTGTTCTGCATCAAGATAAAAGAATAGCAGCACATGCTCAACTATATGCCAGATACTTGATTCCAAGCCTTTCAGCCAATGCTCTTCTTCGGTGCTTTGTTAAATTCCTACAAACACAGAACATTGTCCTTCCTATGGTGCTAGCTTCTGGTTTCACTACCTTAACACATGTCCTTCTCTCTTGGCTTTTCATTCTTAAACTTAGACTTGGCATCAAGGGAGCTGCCATTGCATTTTGCCTTTCAAATTGGCTGAACACAATGCTACTAGCACTTTACATCAGGCTCTCCTCTTCCTGCAAAACCACTTGGACTGGCTTCTCAAGGAAATCCTTGCATAATATTCCTCAGTTTCTCAGGCTTGCCTTTCCCTCAACACTCATGGTCTGCCTAGAGACCTGGACTTTTGAACTGATGGTACTCCTATCTGGTGCTCTTACTAATCCAACATTGCAAACTTCAGTACTTTATATGTGTTTTCAAACATCTGGGCTCTTTTGGATGATACCCTTTGGAATTGGTGCAGCTGCAAGTACAAGGATCTCTAATGAACTAGGTGCTGGCTGTCCAAAATCTGCATTTTTAGCTGTTAAAGTCACCTTATCAATGTCCTTCATCTGTGGTGCCTTAGAATTAACTCTCCTTATGCTGACAAGGAACTTTTGGGGCCGAATTTTTACCAATATACCTGAACTAGTCAGTTATGTGGAGTCCATGACACCAATTCTTGCAAGCCTTGTCTTTGTAGATTCAATTCAAACAGCATTCTCAGGTATAGCCAGAGGATGTGGCTGGCAGAAGCTTGGTGCATTTGTCAATCTTGGATCCTATTATCTTGTTGGAGTTCCCTTTTCAATCCTTTTAGCTTTTGTCCTCCACATGAAGGGAGTGGGACTCTTGTTAGGGATTGTACTTGCACTCAGCATACAAGTGCTGTGTTTTCTTGCAGTCACCTTACACACCAATTGGGAGAAAGAGGCAAATAAGGCTGCTATAAGAGTAAAAGGCAAAGGGGACCAAGCTGATATACATTAG 1386 0.425 MATWKETVEEAKKQLWLAGPMVFVCVFQYSLQMISLMFVGHLDEFLLAGASLAASFVNVTGFSILIGMSSALDTFCGQSYGAKQYHMVGIHMQRAIVVTMLATIPMSIIWAYLRPILVVLHQDKRIAAHAQLYARYLIPSLSANALLRCFVKFLQTQNIVLPMVLASGFTTLTHVLLSWLFILKLRLGIKGAAIAFCLSNWLNTMLLALYIRLSSSCKTTWTGFSRKSLHNIPQFLRLAFPSTLMVCLETWTFELMVLLSGALTNPTLQTSVLYMCFQTSGLFWMIPFGIGAAASTRISNELGAGCPKSAFLAVKVTLSMSFICGALELTLLMLTRNFWGRIFTNIPELVSYVESMTPILASLVFVDSIQTAFSGIARGCGWQKLGAFVNLGSYYLVGVPFSILLAFVLHMKGVGLLLGIVLALSIQVLCFLAVTLHTNWEKEANKAAIRVKGKGDQADIH* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0656 461 PANTHER MULTIDRUG RESISTANCE PROTEIN 5 450 - -
Vra1g0656 461 CDD MATE_eukaryotic 10 446 IPR045069 GO:0042910|GO:1990961
Vra1g0656 461 Pfam MatE 20 180 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra1g0656 461 Pfam MatE 241 403 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra1g0656 461 PANTHER PROTEIN DETOXIFICATION 5 450 - -
Vra1g0656 461 TIGRFAM matE: MATE efflux family protein 20 416 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0656 Vra-Chr1 7722994 7727011 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2496 8 42904065 42906775 Vra1g0656 1 7722994 7727011 ECH
Vra1g0656 1 7722994 7727011 Vra1g0656 1 7722994 7727011 ECH