Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0647 ATGGATCCTCCACCTCTCTCTGCCGCAACCATCACCACTCATAAAAATCATCCTGATTCCATAGAGTCTTCTTCTCCGCGTTCCCGCAATGCAGAAATATGGAGTGATGAGAATTTACCGGCCGTTCCTGGGGCCAAGCTGCGCCTCATGTGCAGCTATGGTGGCCACATCATGCCACGCCCTCATGACAAGACTCTCTGCTACGTCGGCGGTGATACAAGGATTGTGGTGGTGGACCGCCACTCTTCGTTGAAAGATCTGTGTTCACGGCTTTCCCGAACCATTCTCCATGGAAGACCCTTCACACTGAAGTACCAGCTTCCCAATGAAGACCTTGACAGCCTCATCACTGTCACCACTGATGAAGATCTTGACAACATGGTGGAAGAGTATGATCGAATTACGGCGAAAGGCGCGGCTTCTTCACGGCTGAGGGTGTTCCTGTTCTTCACCAAACCCGAGGCCTCAGTTTCAATGGGATCACTACTTGATGATGTGAAGTCAGAGACATGGTTTGTTGATGCACTCAACAACTCTGGAATGTTAAACAGAGTAGTTTCTGATACTGCTGCAGGGGATTCTTTTGTGAACCTTGATGGTGGTGGTGGTGTTAGTGCTAGTGGTTCAAGCAACAACTTGGAGGCTTTGCCTGATACTAACAATAACAAGGCCAAGAACTTGCCTGATGTGGTTCAATCAAGTCCTGGTTCACCTATGATGGAGAACAGTTCCTCTTCTTCTCCTTCTTTCTCTCCTTCTCTGGCAAATCTGCCGCCCATTCGGGTACGTGTTGATGACAACAGTAGTAGGCTTCAACAAGAGAACAAGGTTGGGGGGCTGCCGGAGGAGCAGTTGGTTCAGATGACAATTGCAAGTGGGCTGAAGCAAGATGATGGGTTGGTGAGTGTGGTTTCTTCTGCAGTGGCTGCACCTGCAATTCCTGCAGCTGTGACTATGCCATCTGTTGGGGTGGTTACTACCAGTGATAATGTGATGAACAGAGTTCTTTCTGAGGACGAGAGATCTGATCTCGGGTTTCGGAAGCCCCCTTTACCACTGCAGCTTGTGCAGCCAAGGACTAGTGGTGGTTTGAATTTGCCTTCTCCTGATTCAGTTACAAGTGATAGCAGTATTGCATCTGCAAATTCTTTCTCCAAGACTGTTTACTATCAAGACCAAGTCCAAGCTGCACAACTAGACAACAAACTAGTTGCTTTACCAAATGGCAAGAGTGAAATATCTGATCAGGTGATTCAGGTCCATGGTCAAGTTCAGGATTCTGGCTACCCATTACCCCCACAATTAGATCAAAATAGGCAACTTCAGCAGCAAAAGCCCTTGGTCCATGCCAGCTCTCACTACATCCACCACCCTGCAGCCACAGGGCAAATACCAGTTTCATCATACTACCCAGTTTATGCCCCACCACCTCAACAACAACTTCACCCTCCAATTGGTCAGCAACAGTACCCAGTTTATGTGATGCCTGTTGGACCCACACAAGTAACACAACCATACAACATGGCCTTGCAGCACAACATGGGTGACCCAAATGTGTTACTCTCAGGCAGAACCCTAATACCACAAAGTGCTGTTACCTCAGCAGCATACAAGGATGGTACTCCACCTATCTATCCCACCAAATCAGTTAGCCCTACTATACCTGAGGTGACTCCAAGTGTTTACAAGGCTCCTCCTCCTGTGGCCTCAAACCCTGCATATGCTCCAATACCTCCCAACCAATTTCAGCCACAGTATGTGGGGTTGTCTCAGTTCCATCATCCACCACAGTCCATTGCTGTGGCTCCCTCTAGTACTACTACTAATTATGGTTATGAATATGGTGGCCATGTGCAAGACCAAGCTTACTACACCCAACAACAAACCACTACAGCTCCATTGCTTCCTCAGTATCAATCCATGACCCCAGCTGCAGCAGCTGCAGCACTGTCAGATGCTTCCAAACAGTTTCCTGCAGACACCATTCAGCAGCAAAATAGAGCATCACAGCCAGTATGA 2019 0.4824 MDPPPLSAATITTHKNHPDSIESSSPRSRNAEIWSDENLPAVPGAKLRLMCSYGGHIMPRPHDKTLCYVGGDTRIVVVDRHSSLKDLCSRLSRTILHGRPFTLKYQLPNEDLDSLITVTTDEDLDNMVEEYDRITAKGAASSRLRVFLFFTKPEASVSMGSLLDDVKSETWFVDALNNSGMLNRVVSDTAAGDSFVNLDGGGGVSASGSSNNLEALPDTNNNKAKNLPDVVQSSPGSPMMENSSSSSPSFSPSLANLPPIRVRVDDNSSRLQQENKVGGLPEEQLVQMTIASGLKQDDGLVSVVSSAVAAPAIPAAVTMPSVGVVTTSDNVMNRVLSEDERSDLGFRKPPLPLQLVQPRTSGGLNLPSPDSVTSDSSIASANSFSKTVYYQDQVQAAQLDNKLVALPNGKSEISDQVIQVHGQVQDSGYPLPPQLDQNRQLQQQKPLVHASSHYIHHPAATGQIPVSSYYPVYAPPPQQQLHPPIGQQQYPVYVMPVGPTQVTQPYNMALQHNMGDPNVLLSGRTLIPQSAVTSAAYKDGTPPIYPTKSVSPTIPEVTPSVYKAPPPVASNPAYAPIPPNQFQPQYVGLSQFHHPPQSIAVAPSSTTTNYGYEYGGHVQDQAYYTQQQTTTAPLLPQYQSMTPAAAAAALSDASKQFPADTIQQQNRASQPV* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0647 672 MobiDBLite consensus disorder prediction 1 30 - -
Vra1g0647 672 Gene3D - 64 150 - -
Vra1g0647 672 PANTHER OS05G0427100 PROTEIN-RELATED 1 665 - -
Vra1g0647 672 Pfam PB1 domain 63 149 IPR000270 GO:0005515
Vra1g0647 672 SMART PB1_new 61 151 IPR000270 GO:0005515
Vra1g0647 672 CDD PB1_UP2 50 149 - -
Vra1g0647 672 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 1 665 - -
Vra1g0647 672 MobiDBLite consensus disorder prediction 208 257 - -
Vra1g0647 672 MobiDBLite consensus disorder prediction 656 672 - -
Vra1g0647 672 ProSiteProfiles PB1 domain profile. 46 149 IPR000270 GO:0005515
Vra1g0647 672 SUPERFAMILY CAD & PB1 domains 62 159 - -
Vra1g0647 672 MobiDBLite consensus disorder prediction 208 254 - -
Vra1g0647 672 MobiDBLite consensus disorder prediction 9 30 - -
Vra1g0647 672 MobiDBLite consensus disorder prediction 649 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0647 Vra-Chr1 7531356 7534162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0647 46 178 MAP Kinase Kinase Kinase AT5G57610 44.030 5.59e-27 115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2517 8 43118400 43121059 Vra1g0647 1 7531356 7534162 ECH
Vra1g0647 1 7531356 7534162 Vra1g0647 1 7531356 7534162 ECH