Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1502 ATGCTTCCTGTCTTGCTTGCAGCTCCATGGGAACAATACCCAGCAGACGATTGTCCTCCTTCTCCTCAACCATGTGGCTATCTGGGGAATATCTTCCCCCCCTTCACAACAAGCCACGATCCCAAATGTGGGTTGCGAATAACTGGCTGTGACGACGACGGTGAACTCAAACAAATCGCACTGACAGACCAACAATGGTATAAAATTGATACCATAATAAATCCAACTTTCGACCCCAATGACCTTTCCATTTTCATCCATTACCCAGATTTTGACACCATTGTTCCAGAGCAGCCTAGGATAGATAAAAGGTATTTCAAGATCGATAACAATATTACCTTCTTTGGATGTCTTCGCAACACCGAAAACAAAATTTCAACTCCTCCAAATATGTTTCTATACAGACACTGCCAAAACATGTTTTCATACTACGACATGTACTTTAGTTCTTCCCATCCAGTGGACTATCCCATGCCGAACATTCCATTCGCATGCTTACTTTTTCAGGTTTCTCAACCTGAATCCTTTTGCAATTGCCCTCCGTTTAAACTTTTATTTTCTATTCTCCAAATTAAATTAAATGTGCCCAAAGATTGCAAACCCTGTCCTCATGGCCCGTGTAAGTTGAAGTTTGAAGGACAAGGCCTCAATTGTGACCCACCCAGTGATTATGGACAACCACCTCGTCTTTCCCGGCCCCTGGTTTCTTCACCTCCAATGGCCAAGGCTAAGAAACTGGCTTTATGTGTTGGAATACCAGTCCTGGTTGGGGTTTTTGCCTTGGTTGTTGTTATTCTTTTGTTGTTGAAAGGAAGAAAGAAACGTTCAGGCCTCCAAAACAAATCAAGAAGCGCTTATTCTTCTTCCTTCAGAAATACAACGTCCATGGAAAGTGGAGGTGTCTACTTTGGGATCTCTGTCTTCTCCTTCGACGAGCTGAGAGAGGCAACCAACAATTTTGATGAAGCTAGGAAGCTTGGAGAAGGAGGCTTTGGAACTGTTTACTTCGGAAAACTTAGAGATGGTCGTGAAGTTGCAGTGAAGCGCCTGTTCGAGCGCAGCTATAGGCCAGTGGAGGCATTCGTCAATGAAATCCAGATCCTCACACGTCTGCGACACAGAAACCTTGTGTCCCTCTATGGCTGCACTTCGAGTCACAGCCGTGACTTACTGCTAGTGTACGAGCACATCCCAAATGGCACTGTTAGCTCTCATCTCCATGGTGATGAAGGAAATTCATGCTTTTTGCCATGGCATCTGAGAATGAAAATTGCCATACAAACTGCAAGTGCATTGACTTATCTCCACGCTTCTGACACCATTCACAGGGACGTGAAAACCAGCAATATTCTCTTGGACAATGCGTTTGATGCTAAGGTTACGGATTTTGGTCTTTCAAGGCTGTTCCCTGATGATGTCACTCACGTTTCCACTGCACCAAGAGGTACCCCTGGTTATGTTGATCCGGATTATCGCCTATGTTACCAGCTGACAACAAAGAGTGATGTATATAGCTTTGGGGTTGTGCTTGTCGAGTTAATATCATCTCTCAAAGCAGTTGACATGAACAGGAACAAGGAAGACATTAAGTTGGCAAATCTTGCCATTAGGAAGATTCAAAAGGGTTCCTTTTCTGAGTTGGTTGATCCTTCCCTTGGTTTCCAATCAGATGAGAAACTAAAAATGATGATAGGTTCGGTGGCAGAGTTGGCTTTTCGGTGTCTGCAACAGGACAAGGAATTGAGACCCTCTATGGGTGAAGTATTGGAGGAGCTGGAGAGAATTCACAGTGGCAGGGATGAGCCACCGAATCAGGACGGAATTGTCGTTAATGGTGCTATAAGGGCTTCTCAAAGCTATGCTCACCCACCTCTTCCAAACACTCTGATAAACCCACAAACGCGCCTTTTCAAAACAAACTGA 1923 0.4441 MLPVLLAAPWEQYPADDCPPSPQPCGYLGNIFPPFTTSHDPKCGLRITGCDDDGELKQIALTDQQWYKIDTIINPTFDPNDLSIFIHYPDFDTIVPEQPRIDKRYFKIDNNITFFGCLRNTENKISTPPNMFLYRHCQNMFSYYDMYFSSSHPVDYPMPNIPFACLLFQVSQPESFCNCPPFKLLFSILQIKLNVPKDCKPCPHGPCKLKFEGQGLNCDPPSDYGQPPRLSRPLVSSPPMAKAKKLALCVGIPVLVGVFALVVVILLLLKGRKKRSGLQNKSRSAYSSSFRNTTSMESGGVYFGISVFSFDELREATNNFDEARKLGEGGFGTVYFGKLRDGREVAVKRLFERSYRPVEAFVNEIQILTRLRHRNLVSLYGCTSSHSRDLLLVYEHIPNGTVSSHLHGDEGNSCFLPWHLRMKIAIQTASALTYLHASDTIHRDVKTSNILLDNAFDAKVTDFGLSRLFPDDVTHVSTAPRGTPGYVDPDYRLCYQLTTKSDVYSFGVVLVELISSLKAVDMNRNKEDIKLANLAIRKIQKGSFSELVDPSLGFQSDEKLKMMIGSVAELAFRCLQQDKELRPSMGEVLEELERIHSGRDEPPNQDGIVVNGAIRASQSYAHPPLPNTLINPQTRLFKTN* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1502 640 CDD STKc_IRAK 326 595 - -
Vra11g1502 640 Gene3D Transferase(Phosphotransferase) domain 1 397 601 - -
Vra11g1502 640 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 10 604 - -
Vra11g1502 640 Pfam Protein kinase domain 321 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1502 640 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Vra11g1502 640 ProSiteProfiles Protein kinase domain profile. 320 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1502 640 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 10 604 IPR044652 -
Vra11g1502 640 Gene3D Phosphorylase Kinase; domain 1 292 396 - -
Vra11g1502 640 SMART serkin_6 320 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1502 640 SUPERFAMILY Protein kinase-like (PK-like) 302 603 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1502 Vra-Chr11 18411535 18414241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1502 25 606 Receptor kinase-like Gene Family AT1G25390 42.105 1.14e-137 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vra11g1502 Pkinase 1.9e-44 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1502 11 18411535 18414241 Vra11g1502 11 18411535 18414241 ECH