Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1486 ATGCCCGAGTTTTGCGTGACAGGAGGTACTGGGTTCATTGCATCGCACTTAATTAAGATCTTATTAGAAAAGGGTCATACGGTGAGGACCACCGTGAGAAACCCAGAGGATGTGGAGAAGGTTGGTTTTCTGAGCGAACTTAGTGGAGGCAAAGAAAGACTGAAGATTTTGAAAGCAGATCTCTTAGTAGAAGGAAGCTTTGAGAAGGCAGTGACAGGAGTTGATGGTGTCTTTCATACGGCTTCACCTGTGCTTGTTCCAGTCGACGAGAACGTTCAGAAGAATTTGATTGATCCATGCGTAAAAGGAACTTTGAACGTGCTTAACTCCTGTTTAAAGGCAAATGTGAAACGTTTTGTGCTCACTTCTTCTTGCTCTTCCATAAGATACCGTGATGATGTGCAACAACTGGGTCCTCTTAATGAATCTCATTGGACAGACCTAGAGTACTGCAAACGCTACAATTTATGGTATGCATATGCAAAGACGGTGGCAGAAAGAGAGGTTTGGAGAATAGCAAAAGAAAATGAAATTGATGTGGTTGTGGTTAATCCATCTTTCGTTGTTGGTCCACTCCTTGCACCACAACCAACAAGTACACTCCTCTTGATACTTGCCATTGTCAAAGGCATGAAAGGGGAATATCCTAATACAACAGTGGGGTTTGTCCACATAAATGATGTTGTAGCTGCTCACATGTTGGCTATGGAGAATACCAATGCATCTGGAAGGCTTATTTGTTCAAGCACAGTAGCTCATTGGTCACAAATCATTCAAATGCTTCGTTCCAAATATCCCTCCTACCCATTTGAAAACAAGTGCAGCAGCCAGCAGGGAGATGATAACCCACACAGCATGGACACCACTAAAATTACTCAGTTGGGGTTTCCTCCATTCATAACCCTAGATAAAATGTTTGATGATTGCATTACAAGTTTTCAAGACAAGGGCTTTCTGTGA 960 0.425 MPEFCVTGGTGFIASHLIKILLEKGHTVRTTVRNPEDVEKVGFLSELSGGKERLKILKADLLVEGSFEKAVTGVDGVFHTASPVLVPVDENVQKNLIDPCVKGTLNVLNSCLKANVKRFVLTSSCSSIRYRDDVQQLGPLNESHWTDLEYCKRYNLWYAYAKTVAEREVWRIAKENEIDVVVVNPSFVVGPLLAPQPTSTLLLILAIVKGMKGEYPNTTVGFVHINDVVAAHMLAMENTNASGRLICSSTVAHWSQIIQMLRSKYPSYPFENKCSSQQGDDNPHSMDTTKITQLGFPPFITLDKMFDDCITSFQDKGFL* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1486 319 Pfam NAD dependent epimerase/dehydratase family 5 241 IPR001509 -
Vra11g1486 319 Gene3D - 3 319 - -
Vra11g1486 319 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 1 318 - -
Vra11g1486 319 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 317 IPR036291 -
Vra11g1486 319 PANTHER TETRAKETIDE ALPHA-PYRONE REDUCTASE 2 1 318 - -
Vra11g1486 319 CDD FR_SDR_e 5 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1486 Vra-Chr11 18173457 18177389 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1486 5 318 Miscellaneous Gene Families AT5G19440 41.875 2.86e-81 248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1486 11 18173457 18177389 Vra11g1486 11 18173457 18177389 ECH