Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1427 ATGAGGAACTTCAAGGCTTTTGGTCATGCCATCATTGCTCTCTTCGTCATCTCTCTGAGTGCTTGGTGTCATGGACAAGTAGAACTTGACAAAGCTCCTATGGAGAAGGCTGAGAAAGATGCTCTATTCTCCACCATTCAAGGTTTTGTTGGTAACTGGTGGAATGGCTCAGATCTCTATCCAGATCCTTGTGGTTGGACTCCTATTGAGGGTGTTTCTTGTGATCTGTTTGACGGATTTTGGTATGTTACTGTCTTGAACATTGGACCAATTTACGAGAATTCTCTAAGTTGTGCCAAAAATTTGGAGTTCAGATCACATTTGTTTGAGCTGAAGCACCTCAAATCTCTATCCCTATTCAAATGCTTTAGATCACAACGCAGGCATCAGGTTACAATCCCCAATGAAAACTGGGAAAATCTGGCTGGCAGCTTAAAATCACTTGAGTTTAGATCAAACACAGGTCTCATTGGAAAAATCCCTTCAAGTTTTGGTGTCCTCAAGAAGCTTCAGTCCCTAGTACTGTTAGAAAATGGATTAACAGGCGAAATTCCACCAGAGATTGGCAACCTGAACAAGTTGAAGCGGCTTGTCATTGCAGAAAATTATCTCAGTGGACACATTCCAGATATTTTTAGTGCACTGGGTGACTTGTTGATACTTGATTTGAGTAGAAACTCACTATCCGGATCTTTACCTTTAACACTTGGATGCTTAACCTCCCTTTTGAAGCTTGATGTTAGCAATAACCATTTGGAGGGGAATTTGTTGAAAGAATTTGCTTATCTGAAGAATCTGACCCTTTTGGACCTTGGGAATAACAGATTCTCTGGTGGGTTGACAATGAGCATTCAAGAGATGTATTCTTTGGAGGAAATGGTTTTGTCCAACAATGCAATAGGTGGAGATATCAGGATCTTGAAGTGGGAAAACCTGCATAACTTGGTCAGTTTGGATCTCTCTAACATGGGATTAAACGGGGAAATTCCTGAGTCTATAATAGAATTGAAGAGGTTGAGATTTCTAGGCCTCAGTGACAACAACCTCACAGGAAATCTTTCACCAAAACTATCAACTCTTCCTTCTCTCAATGCACTCTATGTTAGTGGTAACAATCTTGAAGGAGAGCTTAAATTCTCTATGGAGTTTTATGAAAAATTGGGAACACGTTTTGGAGCCTGGAACAACCCCAACCTTTGTTGCCCTCTTGGAGCAATTGCAACAAGTAATGTTCCATTTGGGGTAAAACCATGCCAGCAGCAGATCAAATTGGTAGAATCTAACACAAATGCTAGTGATGTTAACAAGACTTTCTATTCCATAGCCTCTTTGTGCTATGCTCCTAATCACTTCTGGTGGACTTTTCCATTGATCATGATTCTCTTCCTAAATTCTTATATAATAGGCCTTTAA 1413 0.4027 MRNFKAFGHAIIALFVISLSAWCHGQVELDKAPMEKAEKDALFSTIQGFVGNWWNGSDLYPDPCGWTPIEGVSCDLFDGFWYVTVLNIGPIYENSLSCAKNLEFRSHLFELKHLKSLSLFKCFRSQRRHQVTIPNENWENLAGSLKSLEFRSNTGLIGKIPSSFGVLKKLQSLVLLENGLTGEIPPEIGNLNKLKRLVIAENYLSGHIPDIFSALGDLLILDLSRNSLSGSLPLTLGCLTSLLKLDVSNNHLEGNLLKEFAYLKNLTLLDLGNNRFSGGLTMSIQEMYSLEEMVLSNNAIGGDIRILKWENLHNLVSLDLSNMGLNGEIPESIIELKRLRFLGLSDNNLTGNLSPKLSTLPSLNALYVSGNNLEGELKFSMEFYEKLGTRFGAWNNPNLCCPLGAIATSNVPFGVKPCQQQIKLVESNTNASDVNKTFYSIASLCYAPNHFWWTFPLIMILFLNSYIIGL* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1427 470 Pfam Leucine rich repeat 193 252 IPR001611 GO:0005515
Vra11g1427 470 PANTHER PIRIFORMOSPORA INDICA-INSENSITIVE PROTEIN 2-LIKE 9 430 - -
Vra11g1427 470 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 9 430 - -
Vra11g1427 470 PRINTS Leucine-rich repeat signature 218 231 - -
Vra11g1427 470 PRINTS Leucine-rich repeat signature 239 252 - -
Vra11g1427 470 SUPERFAMILY L domain-like 44 377 - -
Vra11g1427 470 Gene3D Ribonuclease Inhibitor 211 307 IPR032675 -
Vra11g1427 470 Gene3D Ribonuclease Inhibitor 36 210 IPR032675 -
Vra11g1427 470 Gene3D Ribonuclease Inhibitor 308 404 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1427 Vra-Chr11 17356554 17359234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1427 144 427 Receptor kinase-like Gene Family AT1G73080 37.762 2.17e-32 129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1427 11 17356554 17359234 Vra11g1427 11 17356554 17359234 ECH