Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1425 ATGGCGTCCGAGAGCGCTTCTCGATCGAGTTCTGCGGCGGATACCTACATTGGGAGCTTGATAAGCCTAACTTCCAAGAGTGAAATCAGATACGAGGGCATTCTGTACAACATCAACACAGAAGAGTCCAGTATTGGCCTAAGAAACGTGCGATCTTTTGGTACAGAAGGAAGGAAAAAGGATGGACCACAAATTCCCCCTGGTGACAAGGTTTATGAGTATATACTTTTCCGTGGTACTGACATCAAGGATTTACAGGTTAAATCCTCTCCACCTGTGCAGCCTCCTCCACAAGTCAACAATGACCCAGCTATTATTCAGTCTCATTATCCTCATCCTGTCACTACATCTACAAGTTTGCCTTCTGCTGTGAGTGGACCTTTGACTGATCTTAACTCTCATACCCCTCAGCATGGACTTCCTGGGTCAAATTTTCAAGGACCCTTACCTTTGTATCAACCTGGAGGGAACATAGGATCATGGGGAGCTTCTCCGCCTGCTCCAAATGCAAATGGTGGTAGGCTTGCTATGCCAATGTATTGGCAAGGATATTATGGTACTCCCAATGGGCTTCCTCAATTGCAACAACAATCTTTGCTTCGACCTCCACCTGGTTTATCAATGCCTTCCTCCTTGCAGCAGCCTATGCAGTATTCCAGTTTTAGTCACTCTTTACCTACTGTATCTTCTAACTTACCAGAATTACCATCATCTTTACTACCTGTGAGTACTACTACCCCTAGTGTAACATCTGCTTCGTTTCCTCCGTCTAATTTTGCCCCAGCACCTTCTGCTTTGCCTCTTGCACCTTCTGCATTGCCTCCTGCACCATCTGCTTTGCCTTCGGCTTTGCCTCCTGCNCCTTCTGCAACGCTTGCTTCTGAAATTTTGCCAGCATCAGTAACAAACAAGATACCCAATGTTTCAACTTCAGCAACCATGTTAGCTGCTAGCTTACCATCACTGACTTCGCTGACTAATTCTGGTCCAGAAATAAATGCTATAGTGCCACCCATCAATAGCAAACCAAATGCAATTTCAGGTTCAAGCTTAGCCTATCAAACTGGATCACAGTTGTCTCCTGCAGTTATTGGATCATCAACTTCTATCCATACAGAAACATCAGCCCCTTCTCTGATTACCCCAGGTCAATTATTGCAGCCTGGACCATCAATAGTTACTTCAGCTCAGCCTTCACAAGCACCTCATAAGGATGTTGAAGTGGTTCAGGTATCATCAATGTCATCTTCTGAGTCATCTCTGCCAGTTTCTACTGATGTTCAACCACCAATACTGCCTTTGCCAGTAACTTCACGACCCAATCACAGGCCTGGTGGAGCTCCTACTCAAACTCATCATAACTATAGTTACCGAGGACGCGGGAGAGGAAGAGGAACTGGGGGCCCAGTCACACAATTCACTGAAGATTTTGATTTCATGGCAATGAATGAGAAATTCAGAAAGGATGAAGTATGGGGTCATCTTGGTAAAAGCAAGTCTCACTCAAAAGACAAAGATGGTGAAGAGATAGCGTATGATGAAGATTACCAAGATGAAGAGAATAGTGATTTATCGAACCTTGAGGTTAAGCCTATTTATAACAAGGATGACTTCTTTGACTCGCTCTCTTCCAACGTGCATGATAATACTTCACGAAATGGAAGGACTAGATACTCTGAACAAGTCAAGATTGATACTGAGACGTTTGGTGATTTTGTGAGGTACCATGGAAGCCGAGGTGGCCGTGGCCCTGGTCGTGGTGGACGAATGCGTGGTGGTTATTATGGAAGAGGAGGAGGATATGGATATGGATATGGCTATTCTGGACGAGGCAGGGCTCGCGGTGGTGGTGGTGGTGGTGGCGGTGGTCGAGCTTTATAG 1881 0.4545 MASESASRSSSAADTYIGSLISLTSKSEIRYEGILYNINTEESSIGLRNVRSFGTEGRKKDGPQIPPGDKVYEYILFRGTDIKDLQVKSSPPVQPPPQVNNDPAIIQSHYPHPVTTSTSLPSAVSGPLTDLNSHTPQHGLPGSNFQGPLPLYQPGGNIGSWGASPPAPNANGGRLAMPMYWQGYYGTPNGLPQLQQQSLLRPPPGLSMPSSLQQPMQYSSFSHSLPTVSSNLPELPSSLLPVSTTTPSVTSASFPPSNFAPAPSALPLAPSALPPAPSALPSALPPAPSATLASEILPASVTNKIPNVSTSATMLAASLPSLTSLTNSGPEINAIVPPINSKPNAISGSSLAYQTGSQLSPAVIGSSTSIHTETSAPSLITPGQLLQPGPSIVTSAQPSQAPHKDVEVVQVSSMSSSESSLPVSTDVQPPILPLPVTSRPNHRPGGAPTQTHHNYSYRGRGRGRGTGGPVTQFTEDFDFMAMNEKFRKDEVWGHLGKSKSHSKDKDGEEIAYDEDYQDEENSDLSNLEVKPIYNKDDFFDSLSSNVHDNTSRNGRTRYSEQVKIDTETFGDFVRYHGSRGGRGPGRGGRMRGGYYGRGGGYGYGYGYSGRGRARGGGGGGGGGRAL* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1425 626 Pfam Scd6-like Sm domain 16 89 IPR025609 -
Vra11g1425 626 SMART LSM14_2 10 110 IPR025609 -
Vra11g1425 626 MobiDBLite consensus disorder prediction 195 217 - -
Vra11g1425 626 MobiDBLite consensus disorder prediction 494 510 - -
Vra11g1425 626 PANTHER LSM DOMAIN, FDF DOMAIN, FFD BOX, DFDF DOMAIN, TFG BOX-RELATED 1 251 - -
Vra11g1425 626 PANTHER LSM DOMAIN, FDF DOMAIN, FFD BOX, DFDF DOMAIN, TFG BOX-RELATED 256 614 - -
Vra11g1425 626 CDD LSm14_N 14 87 IPR025609 -
Vra11g1425 626 Gene3D - 7 92 - -
Vra11g1425 626 MobiDBLite consensus disorder prediction 494 528 - -
Vra11g1425 626 MobiDBLite consensus disorder prediction 380 469 - -
Vra11g1425 626 SMART FDF_2 471 573 IPR019050 -
Vra11g1425 626 ProSiteProfiles TFG box profile. 553 573 IPR025768 -
Vra11g1425 626 MobiDBLite consensus disorder prediction 380 401 - -
Vra11g1425 626 PANTHER SCD6 PROTEIN-RELATED 256 614 - -
Vra11g1425 626 PANTHER SCD6 PROTEIN-RELATED 1 251 - -
Vra11g1425 626 SUPERFAMILY Sm-like ribonucleoproteins 16 92 IPR010920 -
Vra11g1425 626 Pfam FDF domain 472 570 IPR019050 -
Vra11g1425 626 ProSiteProfiles DFDF domain profile. 465 501 IPR025762 -
Vra11g1425 626 ProSiteProfiles FFD box profile. 531 546 IPR025761 -
Vra11g1425 626 MobiDBLite consensus disorder prediction 409 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1425 Vra-Chr11 17320374 17326427 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1425 11 17320374 17326427 Vra11g1425 11 17320374 17326427 ECH