Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1418 ATGTATCCTTCAGTCCACTCTTTCCTCTTCTTCGTCTTCTTCTTCACCATTCTCACCCTTACACATTCGTCAACCGAGTACCTCAAGCTACCGTTAGTCCCTCGAACAACACTCTTCAACGTCTCCAACATCCTCGCCGCCGACCTCCACCGCATCTCCGGCCTCCGTACTTCGCCTCAATCCCCGCTCACCTCCGGCGCCGCCATGGGCTCCGGGCAGTACTTTGCGGACCTCCGCATCGGATCCCCGCCGCAGCGCCTCCTCCTGGTAGTCGACACCGGCAGCGACCTTGTCTGGGTTAAATGCTCCGCCTGTCGTAACTGCTCCACCAGGCGACCCGGATCCGCATTCCTGCCCCGACATTCCAGAAGCTTCTCCTCCTACCACTGCTACGACTCGCCGTGTCGATTCGTTCCTCACCCCACATCCACACACTGTAACAACCGCACTAAACTCCACACACCCTGCCGCTACGAATATTCCTACGCGGATGGGTCCACAACAACGGGCTTCTTCTCCAAGGAAACGACGACGTTCAACACCAGCTCCAACAAACAAGGTAAAATTAAAAACCTGGCATTCGGGTGCGGGTTTAAAACCTCTGGCCCCAGTGTAACAGGCTCCAGCTTCAACGGCGCGCAGGGCGTAATGGGACTGGGCCGCGGGCCCATTTCGTTTACCTCCCAACTTGGCCGCAAATTTGGCAACACCTTCTCTTACTGTCTTCTCGACTACACCCTATCCCCGGCTCCAAAAAGCTACCTTACAATCGGCGCCTCCTCAAACGACGTCATTTCGCGGAAGCTGTTCAGTTACACGCCTTTTGTCACTAACCCTCTGTCTCCCTCGTTTTATTACATCATCATCCAGAGTGTCTCCGTCGATGGCATTAGGTTACCGATAAAACCTTCCGTTTGGGGGATCGATGATAACGGAAACGGAGGCACCGTCTTGGACTCCGGCACCACGCTTTCTTTCCTAGCGGAGCCAGCTTATAGGCAGGTTTTAGCCGCGTTCCGGCGGCGCGTGAGGCTTCCTGCGGCGGAGGGAGCCGCCGCGCTCGGGTTCGACCTTTGTGTTAACGTCTCCGGCATCACAAGGCCGAGGCTGCCGAAGCTGAGATTCTTCCTCGCCGGAAAATCGGTGCTGGCGCCGCCGGCGGGGAATTATTTTATTGAGCCGGTGGATGGAGTAAAGTGTCTCGCGGTTCAGGCAGTTCGACCGGGTTCTGGATTTTCTGTGATTGGGAATTTGATGCAGCAAGGGTACTTGTTTGAGTTCGATTTGCACCGGTCGCGGATCGGGTTCTCGCGTCACGGATGTGCGGTTCGCTAA 1335 0.5625 MYPSVHSFLFFVFFFTILTLTHSSTEYLKLPLVPRTTLFNVSNILAADLHRISGLRTSPQSPLTSGAAMGSGQYFADLRIGSPPQRLLLVVDTGSDLVWVKCSACRNCSTRRPGSAFLPRHSRSFSSYHCYDSPCRFVPHPTSTHCNNRTKLHTPCRYEYSYADGSTTTGFFSKETTTFNTSSNKQGKIKNLAFGCGFKTSGPSVTGSSFNGAQGVMGLGRGPISFTSQLGRKFGNTFSYCLLDYTLSPAPKSYLTIGASSNDVISRKLFSYTPFVTNPLSPSFYYIIIQSVSVDGIRLPIKPSVWGIDDNGNGGTVLDSGTTLSFLAEPAYRQVLAAFRRRVRLPAAEGAAALGFDLCVNVSGITRPRLPKLRFFLAGKSVLAPPAGNYFIEPVDGVKCLAVQAVRPGSGFSVIGNLMQQGYLFEFDLHRSRIGFSRHGCAVR* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1418 444 Gene3D Acid Proteases 259 443 IPR021109 -
Vra11g1418 444 PRINTS Pepsin (A1) aspartic protease family signature 80 100 IPR001461 GO:0004190|GO:0006508
Vra11g1418 444 PRINTS Pepsin (A1) aspartic protease family signature 316 327 IPR001461 GO:0004190|GO:0006508
Vra11g1418 444 PRINTS Pepsin (A1) aspartic protease family signature 413 428 IPR001461 GO:0004190|GO:0006508
Vra11g1418 444 SUPERFAMILY Acid proteases 68 441 IPR021109 -
Vra11g1418 444 PANTHER BNAA02G27600D PROTEIN 22 443 - -
Vra11g1418 444 Gene3D Acid Proteases 55 258 IPR021109 -
Vra11g1418 444 Pfam Xylanase inhibitor C-terminal 285 437 IPR032799 -
Vra11g1418 444 ProSiteProfiles Peptidase family A1 domain profile. 74 437 IPR033121 -
Vra11g1418 444 PANTHER OS07G0603500 PROTEIN-RELATED 22 443 - -
Vra11g1418 444 CDD pepsin_A_like_plant 73 441 IPR034161 -
Vra11g1418 444 Pfam Xylanase inhibitor N-terminal 74 258 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1418 Vra-Chr11 17234826 17236631 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1418 65 441 Miscellaneous Gene Families AT1G77480 24.747 2.95e-23 99.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1418 11 17234826 17236631 Vra11g1418 11 17234826 17236631 ECH