Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1417 ATGAAAAAGGAATTAGATGATCAAGGACAGTGTTCATCTCAACCAATCAACAACAATAACAACAACGATATTCAAAGCTACCAAGAGCACCTTCTCCTTCAACAACAGATGCATCAGCAGCAGCAGCAGCAACAAAATAGTGACAACATCTTCGGGGATTCAAGAGGGTTAATGTTCCCTGAAGTTACTCCAATCATGCAACCGTGGTCCATGCCTCCTGTTCACTCATTCAACCCGGGTCCGGTTCACTACAACAATAACACCAACCCTGTCAGAGACCATCATGACCAAACGTTTATAGTCCCTCCCACACCTTCACCCTATGCGAGCTTCTTCAGCAGAAGGGTCCCTTCTCTTCAATTTGCATACGAGAGTCCTTCTTCTGATCACCACCATCTAAGGATCATATCTGACACCCTCGGACCTATGGTTCAACCCGGTTCAGCACCCTTTGGACTCCAAGCCGAGTTGGGAAAAATGACTGCTCAAGAAATCATGGAGGCTAAGGCTCTTGCTGCATCAAAGAGTCACAGTGAAGCAGAAAGAAGACGTAGAGAGAGAATCAACAACCATCTTGCCAAGCTTCGTAGTTTATTGCCCAACACTACCAAAACAGATAAAGCTTCGCTGCTAGCAGAAGTGATTCAGCACGTGAAGGAGCTGAAGCGCCAAACCTCTCTGATAGCAGAAAGCAGTGCAGTGCCAACCGAGGCAGACGAGTTGACAGTAGATGCAGCAGACGAAGATGGAAAGTTTGTGATCAAAGCCTCACTGTGCTGTGAAGATAGGTCAGATCTCTTACCCGACCTCATAAAAACGTTGAAGGCCTTGAAGCTCAGAACCCTCAAGGCTGAGATCACATCGCTTGGTGGGCGTGTGAAGAACGTGTTGGTCATTGCCGGTGACGAAGAAAGTTCAAACACCAATGGAGAGCAAAGCATTCAGCAGCAACAACAATACTGTATTACCTCAATACAAGAAGCACTGAAGGCAGTGATGGAGAAGAGTGGTGTTGGAGATGAATCAGCTTCAGGGAATGTTAAGCGCCAAAGGACTAATAATATCAATTTTCTTCAACAAAGGTCTTTGTAA 1092 0.4588 MKKELDDQGQCSSQPINNNNNNDIQSYQEHLLLQQQMHQQQQQQQNSDNIFGDSRGLMFPEVTPIMQPWSMPPVHSFNPGPVHYNNNTNPVRDHHDQTFIVPPTPSPYASFFSRRVPSLQFAYESPSSDHHHLRIISDTLGPMVQPGSAPFGLQAELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAESSAVPTEADELTVDAADEDGKFVIKASLCCEDRSDLLPDLIKTLKALKLRTLKAEITSLGGRVKNVLVIAGDEESSNTNGEQSIQQQQQYCITSIQEALKAVMEKSGVGDESASGNVKRQRTNNINFLQQRSL* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1417 363 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983
Vra11g1417 363 SMART finulus 178 227 IPR011598 GO:0046983
Vra11g1417 363 MobiDBLite consensus disorder prediction 34 52 - -
Vra11g1417 363 MobiDBLite consensus disorder prediction 1 23 - -
Vra11g1417 363 PANTHER TRANSCRIPTION FACTOR BHLH30 84 358 - -
Vra11g1417 363 MobiDBLite consensus disorder prediction 8 23 - -
Vra11g1417 363 Gene3D - 167 228 IPR036638 GO:0046983
Vra11g1417 363 CDD bHLH_AtAIG1_like 167 245 - -
Vra11g1417 363 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 228 IPR036638 GO:0046983
Vra11g1417 363 PANTHER TRANSCRIPTION FACTOR BHLH30 84 358 IPR045847 GO:0003700|GO:0006355
Vra11g1417 363 MobiDBLite consensus disorder prediction 34 53 - -
Vra11g1417 363 CDD ACT_UUR-ACR-like 257 333 - -
Vra11g1417 363 Pfam Helix-loop-helix DNA-binding domain 175 221 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1417 Vra-Chr11 17200496 17204602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1417 22 361 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 55.191 8.57e-112 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra11g1417 HLH 2.5e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1417 11 17200496 17204602 Vra11g1417 11 17200496 17204602 ECH