Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1415 ATGGCTGGACCATCATGGTTGGTTGACAAAAGTAGAATTGCGACCAAAATTAAATGTGCATCAGGAACATGTGATCCTGAAAAGATTATATGGAGCAGCAATCCTACAAAGCCTTGCCCAAATTGTCATCATGATATTGACAACAGTGATGTAGCACAAGAGTGGCCTGGCTTACCAAAAGGTGTCAAATTTGATCCATCTGATCAAGAGATAATCTGGCACTTGCTTGCGAAAGTGGGGGTAGAAGGTTCCAAACCTCATCCTTTCATTGATGAATTTATTACTAGTCTTGAAGAAGATGATGGGATTTGCTATACTCATCCTAAAAGTTTACCTGGTATTAAGCAAGATGGAAGTGCTTCGTTCTTTTTTCATAGAGCAATCAAGGCTTACAACACTGGCAACCGAAAGCGTAGAAAGATAACAAGTCAAGATTTTGGAGATGCCCGCTGGCACAAGACTGGAAAGACTAAACCAATTGTCTTGGGTGGGACTCAAAAAGGATGGAAAAAGATTATGGTTCTGTATGAAAATAATATAGGAGGAGGAAAAGATGAAAAAACTAATTGGGTTATGCATGAATATCACCTAGGAGCAAAAGAAGATGAAAATGATGGGGAGTACATTTTCTCTAAAGTGTTTTACCAGCAACAAGTGAAATTGGGTGATAAAGATGATCAAGATGTTACTGAAGCAACTGAATCAACAATTGTGAAGGTGGTTCCAAACACTCCCCAATTGGTGACACTTGATCCTCCTTGCAACAAAAGGCATTGTGCAAATCTGGACCAAGAACAAGAAACACATAGTCTACAGCTGTCTCAGATGGATTGTTTACATGAAATTCAAGATGATTGCCAAGAACTTGCAACTGAATCTCAAAATGAAGGGGTGGAAAATAAAGAAAGTAATGCTGAGGAAGGCTCAAAATGGTGGGACAGCCAGTCACAGAATATGTTGGACTCTCAACAACTGGTTGAAGCTCTGTCTCTGTGTGACGATCTCCTCTACAGCCAGTCTCCCAGTAGAGATGGAAAAAATGAAGATCATAAGAACCAACCTGGTCTTTCGGTTTATGCTCAGCTAGGACCAGAATGTCTGAAGAAGGATATTGAAGAGTGTCAAAATCTTGTCCATGATCCTGCAAATATAGTGAATGATAACCCTTCAGAGATTCGACTAAGTCAGCTGGAATTTAGTTCACAGGACAGCTTTATTTCCTGGGGATACAACAAGGCTGTGAACTAA 1248 0.4006 MAGPSWLVDKSRIATKIKCASGTCDPEKIIWSSNPTKPCPNCHHDIDNSDVAQEWPGLPKGVKFDPSDQEIIWHLLAKVGVEGSKPHPFIDEFITSLEEDDGICYTHPKSLPGIKQDGSASFFFHRAIKAYNTGNRKRRKITSQDFGDARWHKTGKTKPIVLGGTQKGWKKIMVLYENNIGGGKDEKTNWVMHEYHLGAKEDENDGEYIFSKVFYQQQVKLGDKDDQDVTEATESTIVKVVPNTPQLVTLDPPCNKRHCANLDQEQETHSLQLSQMDCLHEIQDDCQELATESQNEGVENKESNAEEGSKWWDSQSQNMLDSQQLVEALSLCDDLLYSQSPSRDGKNEDHKNQPGLSVYAQLGPECLKKDIEECQNLVHDPANIVNDNPSEIRLSQLEFSSQDSFISWGYNKAVN* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1415 415 Pfam No apical meristem (NAM) protein 59 197 IPR003441 GO:0003677|GO:0006355
Vra11g1415 415 Gene3D NAC domain 67 220 IPR036093 GO:0003677|GO:0006355
Vra11g1415 415 ProSiteProfiles NAC domain profile. 58 216 IPR003441 GO:0003677|GO:0006355
Vra11g1415 415 SUPERFAMILY NAC domain 44 216 IPR036093 GO:0003677|GO:0006355
Vra11g1415 415 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 2 409 - -
Vra11g1415 415 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 2 409 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1415 Vra-Chr11 17169224 17173552 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1415 23 220 NAC Transcription Factor Family AT1G28470 52.941 3.77e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra11g1415 NAM 3.4e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1415 11 17169224 17173552 Vra11g1415 11 17169224 17173552 ECH