Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1413 ATGGCCGCTGTTGCAACTACAGGAATTGGAGTAGGAGTGACCAAGCTCCAACAACCCCAAAAACCAAGGCAGAACAAGTCCTTGTTTTTTGGCCAGAGGCTTAGGATTCGACCCTCTGGGGAGGCTCAATGCAGTTCAAGATTCAATTTTTCAAACCCAAAAGTGGTTAAAGTTTTTGCACTAGGGGGTGAATGGATTGACACAGTTCACAACCTTTTTGTGGGTGTTGGGGTTGGACTTCCTTGCAGTGTGATGCAGTGTGGGGATGTAATCTATAGGAGCACTCTTCCCAAGTCCAATGGCTTGACTCTTACTGTCCCTGGGGTGATTCTGGCTTTGGGGACTCTATCTTACCTTTGGGCAACACCTGGTGTGGCACCTGGTTTCTTTGACATGTTTGTTCTTGCCTTTGTTGAGAGGTTTTTCCGACCCAGTTACAAGAAGGATGATTTTCTTCTGGGGAAGAAGTTGGGGGAAGGATCATTTGGAGTGGTTTATAGAGTGTCACTGGCCAACAAACCCTCTTCAAAGGAAGGTGACTTAGTCTTGAAGAAGGCGACTGAATATGGTGCTGTTGAAATTTGGATGAATGAGCGTGTACGAAGAGCTTGTGCAAGCAGCTGTGCAGATTTTGTCTATGGTTTTCTTGAGAGCTCTTCAAAGAAATCTGCTGAATACTGGCTTATATGGCGGTTTGAAGGGGATGCCACCCTAGCTGACTTGGTGCAGAGTAGAGAGTTTCCATATAATGTTGAAACATTAATTTTAGGTGAGGTTCAAGACTTGCCCAAGGGATTGGAAAGAGAAAATAGAATCATTCAGACAATCATGAGGCAGATCTTGTTTGCACTGGATGGTCTTCACTCAACTGGTATTGTGCATAGGGATATTAAGCCACAGAACATTATTTTCTCCGAAGAGTCTCGGACATTCAAAATTATTGATCTTGGAGCTGCTACAGACCTGCGAGTGGGCATAAACTACATTCCAAAGGAGTTTCTTTTGGATCCAAGATATGCTGCACCAGAGCAATACATCATGAGCACACAAACTCCTTCAGCACCCTCAGTTCCAGTTGCAACTGCACTTTCCCCAGTCTTATGGCAGTTGAACTCGCCAGACAGATTCGACATCTATAGTGCTGGTTTAATCTTTCTACAAATGGCTTTCCCTGGTCTACGGACTGATAATAGCCTCATTCAATTCAATCGTCAATTAAAGAGGTGTGACTATGACATAGTTGCATGGAGAAAAACTGTAGAGCCTCGATGCGGCCCTGAACTAAGGAGGGGCTTTGAGCTGTTGGATTTGGATGGTGGAATAGGATGGGAACTTCTAAAATCAATGGTAAGGTACAAAGCAAGACAACGACTGAGTGCAAAAGCAGCATTAGCTCATCCTTACTTTGACAGAGAAGGCTTGTTGGCATTGTCTTTCATGCAAACACTGAGGCTGCAGCTTTTGCGGGCAACTCAACAGGACTATGGAGAAGCTGCCAAGTGGATTACTAATCTAATGGCAAAATCAGGGACTCAGAAGGATGGTGGATTCACTGAAGCTCAGCTTCAGGAACTAAGAGAAATCGAACCGAAAATGAAGGCCAGTGCACCAAGGAATGCTCTAGCTTCAGCTCTTAAACTTCAGAGGAAAATTATAAGAACCTTAAATGAGAGTATGGATGAGCTCAACAGACGCAGGAAAAGCTTTTGGTGGAGCAGATGGATCCCAAGAGAAGAATGA 1740 0.4448 MAAVATTGIGVGVTKLQQPQKPRQNKSLFFGQRLRIRPSGEAQCSSRFNFSNPKVVKVFALGGEWIDTVHNLFVGVGVGLPCSVMQCGDVIYRSTLPKSNGLTLTVPGVILALGTLSYLWATPGVAPGFFDMFVLAFVERFFRPSYKKDDFLLGKKLGEGSFGVVYRVSLANKPSSKEGDLVLKKATEYGAVEIWMNERVRRACASSCADFVYGFLESSSKKSAEYWLIWRFEGDATLADLVQSREFPYNVETLILGEVQDLPKGLERENRIIQTIMRQILFALDGLHSTGIVHRDIKPQNIIFSEESRTFKIIDLGAATDLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSVPVATALSPVLWQLNSPDRFDIYSAGLIFLQMAFPGLRTDNSLIQFNRQLKRCDYDIVAWRKTVEPRCGPELRRGFELLDLDGGIGWELLKSMVRYKARQRLSAKAALAHPYFDREGLLALSFMQTLRLQLLRATQQDYGEAAKWITNLMAKSGTQKDGGFTEAQLQELREIEPKMKASAPRNALASALKLQRKIIRTLNESMDELNRRRKSFWWSRWIPREE* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1413 579 SMART serkin_6 151 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1413 579 Coils Coil 545 565 - -
Vra11g1413 579 Gene3D Phosphorylase Kinase; domain 1 139 231 - -
Vra11g1413 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 292 304 IPR008271 GO:0004672|GO:0006468
Vra11g1413 579 PANTHER SERINE/THREONINE-PROTEIN KINASE STN7, CHLOROPLASTIC 13 579 - -
Vra11g1413 579 Gene3D Transferase(Phosphotransferase) domain 1 260 473 - -
Vra11g1413 579 ProSiteProfiles Protein kinase domain profile. 151 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1413 579 SUPERFAMILY Protein kinase-like (PK-like) 147 474 IPR011009 -
Vra11g1413 579 ProSitePatterns Protein kinases ATP-binding region signature. 157 184 IPR017441 GO:0005524
Vra11g1413 579 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 13 579 IPR044803 GO:0004674|GO:0009579
Vra11g1413 579 Pfam Protein kinase domain 154 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1413 579 CDD STKc_SNT7_plant 155 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1413 Vra-Chr11 17148145 17154505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1413 269 470 Core Cell Cycle Gene Families AT2G38620 30.986 2.33e-17 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Vra11g1413 Pkinase 1.6e-19 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1413 11 17148145 17154505 Vra11g1413 11 17148145 17154505 ECH