Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1240 ATGTCTGAGGCTGCTAAAGACTCAGCCATAAAGCTGTTTGGTAGAACAATTTCTCTGCCACGCCACAAAGAGGTTTCTGCTAATGGTTCTTCTTCTGAACCTGCTCCTCCTCAAGATTATTCTCACCATCACAGTCCTCCTTCATCTTCATCTTTTCCACGTGAAGTGACCTCCACAACGAACCATGAACCTGAGAGTGACAAGGAAACATCAAGGAAAGAACTCACCTCAACACAAGATGACGAAATCTTACATGAAGAACTGAAATCTCCAACATCCTCATGCAATCTCGAGAACCCCAAGACCCCCTCAACGGAAATAGAAACTTCCTTAACGAAATCACCTAAAAAGGGAGACCAAAGCGACACGACAAGCGCATCAGAGGACAAAACTCCAAAGAAACCAGACAAGATCCTTCCATGCCCTCGTTGCAACAGCATGGACACCAAGTTCTGCTACTACAACAACTATAACGTGAATCAGCCACGCCACTTCTGCAAGCACTGCCAGAGATACTGGACTGCAGGAGGAACCATGAGGAATGTGCCAGTTGGTGCAGGTCGCCGCAAGAACAAAAACTCCTCTTCTGCTGCATCACATTATCGTCAAATAATGGTTCCTGAAACCCTTCATAACGGATCATTGCACAGTGCTGTGTTGACCTTTGGATCAGATTTCCCTCTCTGTGACTCCATGGCTTCTGTGTTGAGCCTTGCTGAGAAAACACAAAACGGTGTCCTCAACGGCTTTCATTCACCTAAGAATAATGCTAGCACTGTTAATAATAGCAATACTGGTGATGATATTAAGTCAGTTGGTGCTTCTGTTATGGCTTCATCTTTGTGTGAGAAGAGAGACAATGCTAATAGTTCTCATGAAGAATCAGTGGATAAGATTTATCATCAAGGTTTCAGTCCTCAATTGTGCCTCACAGGTTCTTCTTCATCATCTTCTTCTCCTTGGCCTTATCAATGGAACCCTGCAATGACTCCTTCTGCTTTTTACCAACCTGTATCCTTCTACCCCACACCAGCATTCTGGAGATGCATGCCACCACCATCTTGGAGTGTAAATTACCAATCTGCCCCTTGCTCTGGTCCAAACTCACCAACCTTGGGGAAACATTCAAGAGAAGGGGACATCTTGTTCCAAAAGCCTGGCACTGAAAGCAGCAGCAACATGGCAGAAAATAGCAACAACACTGTGTTGATCCCCAAGACGCTGAGAATTGATGACCCTACAGAAGCTGCAAAGAGCTCTATATGGTCAACACTAGGAATCGAGAACGAGAAGGGAAACTCTCTCAATGGAGGAGGCCTTTTCAAGGCATTTGCATCAAAGGGAGGCAGTGATGACAAGAAGAACCATGTGGTGGTTGAAGCATCGCCAGTGTTGCAAGCCAACCCTGCAGCTTTGTCAAGGTCTCTTGTATTCCATGAGAGAACATAG 1449 0.4541 MSEAAKDSAIKLFGRTISLPRHKEVSANGSSSEPAPPQDYSHHHSPPSSSSFPREVTSTTNHEPESDKETSRKELTSTQDDEILHEELKSPTSSCNLENPKTPSTEIETSLTKSPKKGDQSDTTSASEDKTPKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKHCQRYWTAGGTMRNVPVGAGRRKNKNSSSAASHYRQIMVPETLHNGSLHSAVLTFGSDFPLCDSMASVLSLAEKTQNGVLNGFHSPKNNASTVNNSNTGDDIKSVGASVMASSLCEKRDNANSSHEESVDKIYHQGFSPQLCLTGSSSSSSSPWPYQWNPAMTPSAFYQPVSFYPTPAFWRCMPPPSWSVNYQSAPCSGPNSPTLGKHSREGDILFQKPGTESSSNMAENSNNTVLIPKTLRIDDPTEAAKSSIWSTLGIENEKGNSLNGGGLFKAFASKGGSDDKKNHVVVEASPVLQANPAALSRSLVFHERT* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1240 482 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 482 - -
Vra11g1240 482 MobiDBLite consensus disorder prediction 60 88 - -
Vra11g1240 482 MobiDBLite consensus disorder prediction 122 137 - -
Vra11g1240 482 MobiDBLite consensus disorder prediction 1 138 - -
Vra11g1240 482 MobiDBLite consensus disorder prediction 23 59 - -
Vra11g1240 482 PANTHER CYCLIC DOF FACTOR 2 1 482 IPR045174 GO:0003700|GO:0006355
Vra11g1240 482 ProSiteProfiles Zinc finger Dof-type profile. 139 193 IPR003851 GO:0003677|GO:0006355
Vra11g1240 482 Pfam Dof domain, zinc finger 136 193 IPR003851 GO:0003677|GO:0006355
Vra11g1240 482 ProSitePatterns Zinc finger Dof-type signature. 141 177 IPR003851 GO:0003677|GO:0006355
Vra11g1240 482 MobiDBLite consensus disorder prediction 89 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1240 Vra-Chr11 14162089 14165559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1240 1 481 C2C2-Dof Transcription Factor Family AT3G47500 41.352 8.74e-89 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra11g1240 zf-Dof 4.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1240 - - gmx:100775201 676.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1240 11 14162089 14165559 Vra11g1240 11 14162089 14165559 ECH
Vra11g1240 11 14162089 14165559 Vra3g1062 3 10829353 10832615 ECH
Vra11g1240 11 14162089 14165559 Vra7g1898 7 38481871 38485071 ECH
Vra11g1240 11 14162089 14165559 Vra4g1030 4 17519854 17523229 ECH
Vra11g1240 11 14162089 14165559 Vra7g1898 7 38481871 38485071 PCT