Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1113 ATGTCATCCGATGACACACCACCTTCAAAGCCCGCCACAGCAACAACAACAACGGACCAAGAGACCCAAAGTTCCGGTGGCAGAAAAGGCTCCTCCACTAGGCCCCAAGAGCAAGGCCTCAAGTGTCCACGATGCGACTCACCCAACACCAAATTCTGCTACTACAACAACTACAGCCTCACACAGCCAAGGCATTTCTGCAAGACATGTAGAAGATACTGGACAAAAGGTGGGGCTTTGCGTAACGTCCCTATTGGCGGTGGATGCAGGAAGAACAAGAAGGTGAGGTCATCGAGGCTTTCATGTGACTCCAAGGACTCTGGTTCCTCCTCTTCAGACCTTGGTGGCCTCAAGTTCCTTCATACTCTTCCTCCTTCCATGGACTTTCACCTTGGAGGGTTACCCTTCCCTAGGCTTCACCATCACCCTCCAGCAACTTATAACCAATTTTCCTCTTTTGGGGACACTTCTAGTGCTTCTTCCTGTTTCAACCTTGACCCTTCTCCTGGCACCACCTCAAGTTCTTTCGCTGCACTTAATTACCCTTTTTCTTACAATGGTGCAATCCAAGGCATGAGCGCTATGAATGTTCACAGTGGTCACGCCTCTTCCATTGAGTCTTTGAGTTCTATAAACCAGGACTTGCACTGGAAGTTGCAGCAGCAGCGATTGGCAATGCTGTTTGGTGGAGATAACAGCCAGAAAGATCATAGTGGTAGTGGAGGGATGTCACCGACGATTAACCACCTCGAGAACCAGACACAGAAACCACAACCCATTTTGTTTCAAAATCTTGAGGTTTCAAAGGCGGGGATTTTCCCCGTTGAGAACTCTAGAAAAGAAAATGGTCCATGTGGGGACACACACACACCCTCCACTGAGTGGTTCTTTGGGAATTCTTATGCCTCGGTGACTCCTCCTACAGCTACTACTACCAGTAGTGGTGGCCCAGGGAATGATAATGCAAGCAATTGGAGTAGCGGTGTGAATGCTTGGGGTGATGTGCCGCAGCAATATACTGCTTTGCCCTAG 1032 0.4922 MSSDDTPPSKPATATTTTDQETQSSGGRKGSSTRPQEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVRSSRLSCDSKDSGSSSSDLGGLKFLHTLPPSMDFHLGGLPFPRLHHHPPATYNQFSSFGDTSSASSCFNLDPSPGTTSSSFAALNYPFSYNGAIQGMSAMNVHSGHASSIESLSSINQDLHWKLQQQRLAMLFGGDNSQKDHSGSGGMSPTINHLENQTQKPQPILFQNLEVSKAGIFPVENSRKENGPCGDTHTPSTEWFFGNSYASVTPPTATTTSSGGPGNDNASNWSSGVNAWGDVPQQYTALP* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1113 343 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Vra11g1113 343 MobiDBLite consensus disorder prediction 233 250 - -
Vra11g1113 343 MobiDBLite consensus disorder prediction 1 42 - -
Vra11g1113 343 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Vra11g1113 343 MobiDBLite consensus disorder prediction 306 334 - -
Vra11g1113 343 MobiDBLite consensus disorder prediction 1 38 - -
Vra11g1113 343 Pfam Dof domain, zinc finger 38 94 IPR003851 GO:0003677|GO:0006355
Vra11g1113 343 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 21 343 IPR045174 GO:0003700|GO:0006355
Vra11g1113 343 MobiDBLite consensus disorder prediction 231 250 - -
Vra11g1113 343 MobiDBLite consensus disorder prediction 306 343 - -
Vra11g1113 343 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 21 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1113 Vra-Chr11 10732933 10736101 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1113 31 343 C2C2-Dof Transcription Factor Family AT5G65590 39.375 2.41e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra11g1113 zf-Dof 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1113 - - vun:114173233 625.935