Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0756 ATGCGAACGCTTTGTGATGCTTGTGAGAGTGCGGCGGCTATAGTTTTCTGCGCCGCTGACGAGGCTGCACTTTGTCACGCCTGCGATGAGAAGGTTCACATGTGCAACAAGCTAGCAAGTAGACATGTGAGAGTTGGTCTTGCAAGTCCAAGTGATGTGCCACGGTGTGACATATGCGAGAATGCACCTGCTTTCTTCTATTGTGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATAGTTCATGTTGGAGGTAAAAGAACGCATGGAAGATATCTTCTGTTCAGGCAAAGAGTTGAGTTTCCAGGAGACAAATCTAGTCATGCTGAAAATCCAGGTTCACAGCCATTGGAACCTGGTGAGAGTAAAAGAGGACAAAATCAACTTCCCAAACTAAAAATGGGAGAGAAGCAGCACAATCATGTGATGCCTCTGCTTCCAACACCAGGATCTGATGCCGATGGGCATACCAAGATGGAAACTAAAATGATTGATTTGAACATGAAGCCTAATAATAGATTACATGAACAAGCATCAAATAATCAGCCATGA 558 0.4427 MRTLCDACESAAAIVFCAADEAALCHACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKSSHAENPGSQPLEPGESKRGQNQLPKLKMGEKQHNHVMPLLPTPGSDADGHTKMETKMIDLNMKPNNRLHEQASNNQP* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0756 185 CDD Bbox1_BBX-like 4 47 - -
Vra11g0756 185 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Vra11g0756 185 MobiDBLite consensus disorder prediction 105 160 - -
Vra11g0756 185 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Vra11g0756 185 CDD Bbox1_BBX-like 56 96 - -
Vra11g0756 185 SMART bboxneu5 51 96 IPR000315 GO:0008270
Vra11g0756 185 SMART bboxneu5 1 47 IPR000315 GO:0008270
Vra11g0756 185 Gene3D Classic Zinc Finger 2 91 - -
Vra11g0756 185 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vra11g0756 185 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Vra11g0756 185 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Vra11g0756 185 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 184 - -
Vra11g0756 185 PANTHER SALT TOLERANCE-LIKE PROTEIN 1 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0756 Vra-Chr11 6151563 6153584 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vra11g0756 zf-B_box 2e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0756 11 6151563 6153584 Vra11g0756 11 6151563 6153584 ECH
Vra2g0373 2 2891701 2892970 Vra11g0756 11 6151563 6153584 ECH
Vra5g1796 5 23990962 23992238 Vra11g0756 11 6151563 6153584 ECH
Vra11g0756 11 6151563 6153584 Vra7g0115 7 2076094 2079630 PCT