Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0613 ATGATCCAAGAACTCTTGGGTGCTGCTACTGCTAGCCTTATAGCAGGAGAAACAAAAATCTCCATTAATAATAATGGAGGAGGAGGAGCAGGAGGAGGACGACTTCTACTAACACCACCGGCACCGTCTTCTCCTTCTCCGTCTCCTTCTTGCACAACAACTATCACCACTTCCACTAACACCGCCACTTCTTCCAACTCCGACAACCAAAATTTGAGGTGCCCTCGTTGTGATTCATCAAACACTAAGTTTTGTTACTACAACAACTACAACCTCACTCAGCCTCGCCACTTCTGCAAGACATGTCGCCGCTACTGGACCAAAGGTGGTGCTCTCAGGAATGTTCCCATCGGAGGTGGCTGCCGGAAAAGCAAGACCTCCGCCATGTCCAACTCGGTGGGAAAGCAGGCCGCCACAAAGATGAAAGCAGTGGCATCGGAGCTTGGAAGGCCACAGACACTCTTTGACCAAGAGCTTCCACAAACCCCAATCCTTTGGGGCTCACCGCAAAATACTCAACTCATGGCTTTACTAAGAGCTACCCAAAGCCAAAACCAAAACCAAAACTCAAACCCTAACCCTAACCCTAGTCTTGTGTCAATTGCTGTCAAGAGAGAAGGGAACTTATCGGAATCTCACTCCCACATGGTCACTGAGTCATTTCTCCCAAATGGGTTGCTGAATAGTACTAGAACTGGTCTAGGATACGATGGTGTGGGAGAACTTCCTTCACTGGGTCTATGCAGCTCCTTTTGGAGGAATAATCAAAATCAGAATCAGCAGCAAAGCAACGGTTTTGTACTTGGAGAACAGCAAAGTATTGGAGTTCAAGAACTTTACCACAAGTTCAGGTCATCATCGTCAGTTCATTATTGTGGTAGTGATAATTCACCGGTGTTTCTCGGCAACATGCCTTCATCCTCTTCTTTGTCCAACATTTTGGAATCATCTTCAGTTTCTGGCAGCGAATTCGGGTGCTGGAATCCAACCCTTTCCTGGGGTGATCTTCCCACAACAAGTGGAGCATATCCTTAA 1035 0.4715 MIQELLGAATASLIAGETKISINNNGGGGAGGGRLLLTPPAPSSPSPSPSCTTTITTSTNTATSSNSDNQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKTSAMSNSVGKQAATKMKAVASELGRPQTLFDQELPQTPILWGSPQNTQLMALLRATQSQNQNQNSNPNPNPSLVSIAVKREGNLSESHSHMVTESFLPNGLLNSTRTGLGYDGVGELPSLGLCSSFWRNNQNQNQQQSNGFVLGEQQSIGVQELYHKFRSSSSVHYCGSDNSPVFLGNMPSSSSLSNILESSSVSGSEFGCWNPTLSWGDLPTTSGAYP* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0613 344 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 38 342 IPR045174 GO:0003700|GO:0006355
Vra11g0613 344 PANTHER F-BOX FAMILY PROTEIN 38 342 - -
Vra11g0613 344 Pfam Dof domain, zinc finger 70 126 IPR003851 GO:0003677|GO:0006355
Vra11g0613 344 ProSiteProfiles Zinc finger Dof-type profile. 72 126 IPR003851 GO:0003677|GO:0006355
Vra11g0613 344 MobiDBLite consensus disorder prediction 31 72 - -
Vra11g0613 344 MobiDBLite consensus disorder prediction 48 72 - -
Vra11g0613 344 ProSitePatterns Zinc finger Dof-type signature. 74 110 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g0613 Vra-Chr11 4844896 4847211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g0613 40 132 C2C2-Dof Transcription Factor Family AT5G65590 64.211 1.41e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra11g0613 zf-Dof 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0613 - - gmx:100800420 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0613 11 4844896 4847211 Vra7g1114 7 27003447 27005051 PCT