Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1341 ATGGGGTTGAGTTCTAAGCAGGTTTCTAATAGAGGGCTTGATTGGGACCAGACTTTGTTGCAGGCTCAAAACTTGGAGCTCCCAAAGCCTACTCCTATGAGGAAACAACAGCAACAGACTCAGCCATCAGAGCCTTTGAAGTGTCCAAGATGTGACTCCATTAACACCAAATTCTGTTACTACAACAACTACAACAAGTCTCAACCTCGCCATTTCTGCAGAGCTTGCAAGAGGCACTGGACCAAAGGTGGAACTCTGCGCAACGTTCCTGTTGGCGGTGGTCGAAAGAATAAGCGAGCGAAGAAATCGACCACCACCTCAAATGGAAGCATGGATGATGAATTGAGAACCCCCGTTACAATTCCTCCTCTTGCAGTGGATGATCACAAAACTACACCTTCCTCTCTCTACGAATCTCTGTGCCTGCCACAACAGAATCCGACGAGTACCAAAGTTTCCCAAGGCAAGGACTTTGGTATTGGCAATGGAATCTTTCTGAGCTCAACCGTGCCTTTTCCTCAAAACCAAAGCCTTCTCTTCCCTTTCACAACCTCAAACTCCTTTGACACAAACACGTGTGCAGTATCCAACTCTTTGCAATCCTCCAGTGTGTATAACTACGGTGACGAGTTTAAAATACTGGAGGAACCAACCGTGAACAGTACAATGGCCTGCACTAGTGGTGGCAGCAGGACACAACCATGGGAGATCGCAGCAACAAGTTCTGGCTTGGAAATGTCAAACTATTGGAGTTGGGAGGACATCGATTCGTTGGTCTCAACCTATCCAAATAATCCTTGGGATGATTCCGATATCAAACCCTGA 825 0.4679 MGLSSKQVSNRGLDWDQTLLQAQNLELPKPTPMRKQQQQTQPSEPLKCPRCDSINTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRAKKSTTTSNGSMDDELRTPVTIPPLAVDDHKTTPSSLYESLCLPQQNPTSTKVSQGKDFGIGNGIFLSSTVPFPQNQSLLFPFTTSNSFDTNTCAVSNSLQSSSVYNYGDEFKILEEPTVNSTMACTSGGSRTQPWEIAATSSGLEMSNYWSWEDIDSLVSTYPNNPWDDSDIKP* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1341 274 ProSitePatterns Zinc finger Dof-type signature. 48 84 IPR003851 GO:0003677|GO:0006355
Vra10g1341 274 PANTHER OS06G0284500 PROTEIN 28 212 - -
Vra10g1341 274 MobiDBLite consensus disorder prediction 26 47 - -
Vra10g1341 274 MobiDBLite consensus disorder prediction 87 117 - -
Vra10g1341 274 ProSiteProfiles Zinc finger Dof-type profile. 46 100 IPR003851 GO:0003677|GO:0006355
Vra10g1341 274 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 28 212 IPR045174 GO:0003700|GO:0006355
Vra10g1341 274 MobiDBLite consensus disorder prediction 26 46 - -
Vra10g1341 274 Pfam Dof domain, zinc finger 45 99 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1341 Vra-Chr10 18725870 18727275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1341 29 107 C2C2-Dof Transcription Factor Family AT5G60200 61.250 9.63e-30 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra10g1341 zf-Dof 9.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1341 - - vra:106774613 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1790 7 37064356 37066552 Vra10g1341 10 18725870 18727275 PCT