Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1301 ATGGAGCAAGGAGGTGGAGAAGGAGGTGACATGAACAAACTACCTCAGGATTCGAGTATGAAGGAGATGCAACAAGGGGATGCACAGCCTCAGGTTCAGGCCCCTCAACAACCCCAAAAGTGTCCTCGATGCGACTCTCTCAACACCAAATTTTGCTATTACAACAACTATAGCTTGTCACAGCCTCGTTACTTTTGCAAAACATGCAGGAGGTACTGGACTCAAGGTGGAACCTTAAGGAACGTTCCCGTCGGTGGTGGTTGCCGCAAGGGGAAGCGCGCCAAGAGTTCTAATCCATCATCGTCGGAGAATTCCTCTTCTCGGTCGCTGCCGCAACAACAACAATCACAGGACGTGGTGGTTCAAACCCAAGCACCACCTTTAACAACGGTGGTGAGGGCTAAAGACCCTTCTTCGGTTCTGGCTTCACCTTTCTACCAAAGTGGTGGGTACTTGTCTTCTCTGGCTGCTATGCATTCGCTCAATCCATCATCACATCCTTTTGATCAGTCTCTGAACAGTGACGCCTTGCGTTCTTCCAATTTGGGCCTTCTATCTGGTTTCAATGTTCAGCGGCCGACTGGATCGATTGGGACAATTCGTCCGCCGCAATTGTATCAAATGGGCAGTGGTCAGAGGGAGGTGGCGTCTCTCTATGATCAAGGTTTGGTTAATCCATCCTCCAGCATGGCTAATACGAATACCAATAGCAGTGGCGTTTCTCACCATGATTGGTCTCAGAGCTTCATCAGTAATAATACTAATGCTAGCAACAGAGCCTCTGATGCCTCTTTGTGGAGCACCATCAGTACCACTATTGGTGGTAACTCCGAGAGGACTGGTGCTGGTGCTGGTGCTGGTACTGTTTCTGGGTCGTCTTTGGTCCAAAATCAATGGCCTGATATTCCAGGGTATGGCCCTCCACCGTGA 930 0.4978 MEQGGGEGGDMNKLPQDSSMKEMQQGDAQPQVQAPQQPQKCPRCDSLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRAKSSNPSSSENSSSRSLPQQQQSQDVVVQTQAPPLTTVVRAKDPSSVLASPFYQSGGYLSSLAAMHSLNPSSHPFDQSLNSDALRSSNLGLLSGFNVQRPTGSIGTIRPPQLYQMGSGQREVASLYDQGLVNPSSSMANTNTNSSGVSHHDWSQSFISNNTNASNRASDASLWSTISTTIGGNSERTGAGAGAGTVSGSSLVQNQWPDIPGYGPPP* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1301 309 MobiDBLite consensus disorder prediction 17 40 - -
Vra10g1301 309 MobiDBLite consensus disorder prediction 94 121 - -
Vra10g1301 309 MobiDBLite consensus disorder prediction 1 40 - -
Vra10g1301 309 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 4 308 - -
Vra10g1301 309 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Vra10g1301 309 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Vra10g1301 309 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Vra10g1301 309 MobiDBLite consensus disorder prediction 275 309 - -
Vra10g1301 309 MobiDBLite consensus disorder prediction 83 121 - -
Vra10g1301 309 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 4 308 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1301 Vra-Chr10 18410043 18412113 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1301 12 97 C2C2-Dof Transcription Factor Family AT5G60200 65.116 6.75e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra10g1301 zf-Dof 1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1301 - - gmx:100817065 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1301 10 18410043 18412113 Vra10g1301 10 18410043 18412113 ECH
Vra7g1831 7 37620617 37621477 Vra10g1301 10 18410043 18412113 PCT