Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g1300 ATGTCGGGTAACTGTGAGAAAATGGTAGTCATCCCTTCAACGACCAACCAATGGCCACAGGTGGATGATCACAAGGTCTTGATGGCTTCCTTCGGTGGAAGTAACAATAGTAAGGTAATGGAAAAACCAGATCAAGAGCTTGTGCAGCAGCAGCTGCAACAACAAACCCTCAAGTGCCCTCGTTGTGACTCATCAAACACTAAGTTCTGCTACTACAACAATTACAGTTTGTCTCAGCCACGACACTTCTGCAAAGCCTGCAAGCGCTACTGGACAAGAGGTGGAACCCTCAGGAACGTTCCTGTTGGTGGTGGGTGCAGAAAAAACAAGCGTGTTAAGCGTCCAATGACAAGCTCTTCTTCTGCTGCCATTGACACTGCTTCTTCTTCTAATTCTTCTTCTGCTCTCACCGCCGCTTCGCAACCACAGATCGACACTGCTGCTTCAACCTCGAATCACATCAACCCTTTGTTTTATGGGTTGCCTAGTTGCTCCAGCGATGTGAATCTTCCGCTGTTCCCTAGGTTTGGCTCCAGAATCTCCAGTTCCGGGTTTGATCTTCAGCTGAATAATGCCCTTGGATTAGGTTTTTCATCCGGGGTTGTGTCAAATGAACCTAGTGAGAATAATAGCTTTAGAAACGGGTTTGGTTCTAATAACGCGCTTCTTTCAAGTTATAATTCCATCTTTGGTTCTTCTTCAAGTTCTACATCCACTACTCCAGCTTTGTCTTCACTGNTGAGCTCTACTTTGCTTCAACAGAAGTTTATCGGCAGTGGGTTGAAAGATGGTGCTGATAGCAACACTTTCCAGCATGGCTTAGGCTTAACCCCACTAGAGCAGNTGCAAATGNCGAGTGATAACAGTGAGGCAGGGATGGTGTCTTTAAAAGATGTGAAAGTAGAATTAGGACAAAACAGCAGGTTGGAGTGGAATGGTGCTTGTCAAAACCAGATCCAGCATGTGGGCATGTACGATCCGTCGCTTTATTGGANTAATTCAGCAACAGCTTTGGGTGTTTGGAACGATCAAGCTGCGAATATCGGTTCTTAA 1053 0.4558 MSGNCEKMVVIPSTTNQWPQVDDHKVLMASFGGSNNSKVMEKPDQELVQQQLQQQTLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPMTSSSSAAIDTASSSNSSSALTAASQPQIDTAASTSNHINPLFYGLPSCSSDVNLPLFPRFGSRISSSGFDLQLNNALGLGFSSGVVSNEPSENNSFRNGFGSNNALLSSYNSIFGSSSSSTSTTPALSSLXSSTLLQQKFIGSGLKDGADSNTFQHGLGLTPLEQXQMXSDNSEAGMVSLKDVKVELGQNSRLEWNGACQNQIQHVGMYDPSLYWXNSATALGVWNDQAANIGS* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g1300 350 Pfam Dof domain, zinc finger 55 111 IPR003851 GO:0003677|GO:0006355
Vra10g1300 350 ProSitePatterns Zinc finger Dof-type signature. 59 95 IPR003851 GO:0003677|GO:0006355
Vra10g1300 350 ProSiteProfiles Zinc finger Dof-type profile. 57 111 IPR003851 GO:0003677|GO:0006355
Vra10g1300 350 MobiDBLite consensus disorder prediction 106 126 - -
Vra10g1300 350 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 3 338 IPR045174 GO:0003700|GO:0006355
Vra10g1300 350 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 3 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g1300 Vra-Chr10 18393060 18395221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g1300 57 350 C2C2-Dof Transcription Factor Family AT1G28310 40.193 7.84e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra10g1300 zf-Dof 2.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g1300 - - gmx:778098 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g1300 10 18393060 18395221 Vra10g1300 10 18393060 18395221 ECH
Vra7g1832 7 37637134 37639048 Vra10g1300 10 18393060 18395221 PCT