LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra10g1221	ATGGCTGAGGAATCTCAAGGGATTAAGCTGTTTGGCGCAATGATTAGACTCAACACTGAGGAGGTCAAGAAGGGAGAAAAAGGAAGGGAATACAAGAGGGAGGAGAAGAGAACAGAGAAGATAATACCGTGTCCTAGATGCAAGAGCATGGAAACTAAATTCTGCTACTTCAATAACTACAACGTTAATCAGCCAAGGCATTTTTGTAAGAGCTGCCAGAGGTATTGGACTGCTGGTGGCGCCCTCCGAAACGTCGCTGTCGGAGCCGGCCGTCGGAAGGGCAAGCCGCCGTCTCATGCTGCCGCTGAGTTCCCCGATGGGGCTGTCTATGAAAGTTCCGAAGATGAGAACAAGTTTGAGATGGGAAATAGGTTGCTTTCGGAAGAGGTTCACGCTGATTTCCGCCCAATTTTCCCGGCGCCCAAGCGGCGGAGGACTCCATCAGGTGAGCATGAAGGTGAATAA	465	0.5054	MAEESQGIKLFGAMIRLNTEEVKKGEKGREYKREEKRTEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKSCQRYWTAGGALRNVAVGAGRRKGKPPSHAAAEFPDGAVYESSEDENKFEMGNRLLSEEVHADFRPIFPAPKRRRTPSGEHEGE*	155

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra10g1221	154	Pfam	Dof domain, zinc finger	40	95	IPR003851	GO:0003677\|GO:0006355
	Vra10g1221	154	ProSiteProfiles	Zinc finger Dof-type profile.	42	96	IPR003851	GO:0003677\|GO:0006355
	Vra10g1221	154	ProSitePatterns	Zinc finger Dof-type signature.	44	80	IPR003851	GO:0003677\|GO:0006355
	Vra10g1221	154	PANTHER	DOF ZINC FINGER PROTEIN DOF1.5-LIKE	4	145	-	-
	Vra10g1221	154	PANTHER	CYCLIC DOF FACTOR 2	4	145	IPR045174	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra10g1221	Vra-Chr10	17801389	17802430	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra10g1221	2	150	C2C2-Dof Transcription Factor Family	AT2G34140	48.538	4.74e-47	149

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-Dof	Vra10g1221		zf-Dof	4.3e-31	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra10g1221	-		-	gmx:100820604	203.756

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra10g1221	10	17801389	17802430	Vra10g1221	10	17801389	17802430	ECH