Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0169 ATGACGAGGAAGAAAGTGGATCTAACATATATAAAGAATGATTCAAAGAGGAAGACAACATTAAACAAAAGGAAAAATGGTTTAGTGAAGAAGATTAATGAAATCAACATTCTTTGTGGGATTGAAGCATGTGCTATAATTTATACTCCAGATAATCCTCAGCCAGAGGTTTGGCCATCTGATAGGGCAGTCCAAAGTGTGCTTTCTAGGCTTAGGACAGTGTCTGAACTGGAGAAAGGTAAGAAAAAGTTGTGTCAGGAGAGCTTTTTGAGGCAGAGGATCATCAAAGCACAAGCACAACTGAGAAAACTAAGGAATGAAATAAGGAAGAAAGAGGTGACCCTTCTCATGTTTCAATACCTCAATGCTAATAACAACTTTGACAATTCAAGAATGATTGATCTTAATGATATCTCAAACTTGATTGATCAAAACTTGGAAAAAATAGAAAACAACATCAGCATGAGCCAAGCCCAAAAGGTGAAATCTATTGCTGAAAATGGAGGAGAAACCATGAGTTCCCTTGTGAATCGTGTCATAGGGTTAGAGACCCATGTAGAGGCAATGCAACATAATAACTTGTCTATGGATCTCAACAATGGCTATGGTGATGAGATAAGACCATTGAGTGAGGTCAATGTTCTAAGTCCTTAA 654 0.3746 MTRKKVDLTYIKNDSKRKTTLNKRKNGLVKKINEINILCGIEACAIIYTPDNPQPEVWPSDRAVQSVLSRLRTVSELEKGKKKLCQESFLRQRIIKAQAQLRKLRNEIRKKEVTLLMFQYLNANNNFDNSRMIDLNDISNLIDQNLEKIENNISMSQAQKVKSIAENGGETMSSLVNRVIGLETHVEAMQHNNLSMDLNNGYGDEIRPLSEVNVLSP* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0169 217 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vra10g0169 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Vra10g0169 217 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vra10g0169 217 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vra10g0169 217 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vra10g0169 217 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 166 - -
Vra10g0169 217 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 166 - -
Vra10g0169 217 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Vra10g0169 217 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Vra10g0169 217 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vra10g0169 217 SUPERFAMILY SRF-like 1 80 IPR036879 GO:0003677|GO:0046983
Vra10g0169 217 Coils Coil 87 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0169 Vra-Chr10 4618397 4619391 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0169 1 176 Type I MADS-box Gene Family AT5G48670 45.109 3.90e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vra10g0169 SRF-TF 1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0169 - - var:108319985 387.111