Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0093 ATGGACACAGCTCAGTGGGCACAGGGTATTGGAGTTGTTAAACCTATGGAAGGTTCAAAGCCTCCTCCTATGTTGGAGAGAAGGGCGAGGCCTCAGAAGGATCAAGCTTTGAACTGCCCAAGGTGCAATTCCACCAACACCAAATTCTGCTACTACAATAACTATAGCCTCTCCCAGCCAAGGTACTTTTGCAAGACATGTAGAAGGTATTGGACTGAGGGTGGTTCTCTCAGAAACGTTCCTGTGGGTGGTGGCTCTAGAAAGAACAAGAGATCAACTCCATCATCAGCTCCATCACCAGCATCATCATCAGCACCAACAAAGAAGCTTCCTGATCTCACACCACCAAATTTCCCTCAATCAGCTTCTCAGGACCCTAAGATCCACCAAGGCCAAGACCTTAACTTAGCATACCCTCCAGCCGAGGACTATAACACTGTGTCTAAGTTCATTGAGGTTCCTTACAGCACGGAATTAGACAAGGGTAGTCTTCAAAACGCCACTTCCTCATCAACACCGTCTCAGTTGTCTGCCATGGAGCTTCTCAAGACCGGGATTGCTTCCTCAAGGGGTTTAAACTCCTTCATGCCAATGTATAATTCAACTGGGTTTCCTTTGCCAGACTTCAAGCCACCACCTGGCCTTAACTTCAGTCTAGAGGGCTTTGAAAATGGTTACGGGGGTCTTCAGGGAATTCAAGAGGGTCCTACTGGTGCAAGGATCTTGTTTCCCGTCGAGGATTTAAAGCAGCAGGTTCCAACCACAAATGAGTTCGATCAGCAGAATAGAAGTCAAGGGGATTCATCTGGGTATTGGAATGGCATGTTAGGTGGAGGATCGTGGTAG 846 0.4764 MDTAQWAQGIGVVKPMEGSKPPPMLERRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSTPSSAPSPASSSAPTKKLPDLTPPNFPQSASQDPKIHQGQDLNLAYPPAEDYNTVSKFIEVPYSTELDKGSLQNATSSSTPSQLSAMELLKTGIASSRGLNSFMPMYNSTGFPLPDFKPPPGLNFSLEGFENGYGGLQGIQEGPTGARILFPVEDLKQQVPTTNEFDQQNRSQGDSSGYWNGMLGGGSW* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0093 281 MobiDBLite consensus disorder prediction 255 271 - -
Vra10g0093 281 Pfam Dof domain, zinc finger 34 91 IPR003851 GO:0003677|GO:0006355
Vra10g0093 281 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Vra10g0093 281 MobiDBLite consensus disorder prediction 86 128 - -
Vra10g0093 281 MobiDBLite consensus disorder prediction 255 281 - -
Vra10g0093 281 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 1 278 - -
Vra10g0093 281 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Vra10g0093 281 MobiDBLite consensus disorder prediction 1 33 - -
Vra10g0093 281 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 278 IPR045174 GO:0003700|GO:0006355
Vra10g0093 281 MobiDBLite consensus disorder prediction 76 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0093 Vra-Chr10 2940345 2942203 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0093 24 281 C2C2-Dof Transcription Factor Family AT3G61850 45.423 1.42e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra10g0093 zf-Dof 1.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0093 - - gmx:778114 482.641