Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04914 ATGGCTCTCACTTCCCATTCTCCCCAACTTTCCCTCTCTCCATTCACACGTCTAACCCATTTCAACAATACTACTCCTTCTTACACATTCATCACTCACACTTCCCCAACCGTTTCTTCCCGCCAAATTATTCCCAACAACAAAACCCTCTTCTCTCTTTCTCTCACTAAACCAACTCCATCTTTCTCCGTAACGGCTTCTTCTTCTACCAACACACAACCCATGCTCCCCCCTTACAACGTCTTGATTACCGGCTCAACCAAAGGGATAGGGTTTGCTTTGGCAAAAGAGTTTCTGAAAGCAGGGGATAATGTCTTAGTTTGTTCAAGATCAGATGAAAGGGTAGAGACTGCTGTCAAGTGCTTGAGAGAAGAATTTGGAGAGCAGCATGTGTGGGGCACTACATGCGATGTCAAAAATGGAGAGGATGTGAAGAAATTAGTTTCGTTTGCCAAAGAAAAACTGAAATACATTGATATTTGGATCAATAATGCTGGATCAAATGCATATAGCTACAAGCCACTTGCTGAAGCATCGGACGAGGATCTTATTGAGGTGGTTACAACAAACACACTTGGCTTGATGATATGCTGTCGAGAGGCAATAAAGATGATGGTGGGCCAACCTCGCGGAGGACATATTTTCAATATTGACGGAGCAGGTTCAGATGGAAGACCAACTCCCAGGTTTGCTGCATATGGAGCAACAAAGAGAAGCGTGGTTCATTTAACAAAGTCATTACAGGCCGAATTGCAGATGCAAGATGTTAAAAACATCATGGTTCACAATCTTTCGCCAGGAATGGTAACAACTGATCTTCTCATGTCTGGCGCCAATACGAAACAGGCTAAATTTTTTATTAATGTCTTAGCTGAACCAGCCGAAGTGGTTGCAGAATACCTAGTTCCAAACATTAGATCTATCCCTACCAACAGATCAATGAAGCCGACATACATCCGGTTCCTCACGGGTTTGAAAGCCTATTCACAGATATTTTCAAGATTTGCATTTGGGGCAAGGAGGAACCGGTACATCATTGAAGATTGA 1047 0.4308 MALTSHSPQLSLSPFTRLTHFNNTTPSYTFITHTSPTVSSRQIIPNNKTLFSLSLTKPTPSFSVTASSSTNTQPMLPPYNVLITGSTKGIGFALAKEFLKAGDNVLVCSRSDERVETAVKCLREEFGEQHVWGTTCDVKNGEDVKKLVSFAKEKLKYIDIWINNAGSNAYSYKPLAEASDEDLIEVVTTNTLGLMICCREAIKMMVGQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELQMQDVKNIMVHNLSPGMVTTDLLMSGANTKQAKFFINVLAEPAEVVAEYLVPNIRSIPTNRSMKPTYIRFLTGLKAYSQIFSRFAFGARRNRYIIED 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04914 348 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 233 252 IPR002347 -
Vivi7g04914 348 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 167 IPR002347 -
Vivi7g04914 348 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 212 220 IPR002347 -
Vivi7g04914 348 PANTHER NON-SPECIFIC LIPID TRANSFER PROTEIN-RELATED 66 345 - -
Vivi7g04914 348 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 220 248 IPR020904 GO:0016491
Vivi7g04914 348 Gene3D - 68 319 - -
Vivi7g04914 348 PRINTS Glucose/ribitol dehydrogenase family signature 156 167 IPR002347 -
Vivi7g04914 348 PRINTS Glucose/ribitol dehydrogenase family signature 80 97 IPR002347 -
Vivi7g04914 348 PRINTS Glucose/ribitol dehydrogenase family signature 257 274 IPR002347 -
Vivi7g04914 348 PRINTS Glucose/ribitol dehydrogenase family signature 233 252 IPR002347 -
Vivi7g04914 348 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 80 299 IPR036291 -
Vivi7g04914 348 CDD SDR_c 81 302 - -
Vivi7g04914 348 Pfam short chain dehydrogenase 81 276 IPR002347 -
Vivi7g04914 348 FunFam Chlorophyll(Ide) b reductase NOL, chloroplastic 76 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04914 Vivi-Chr7 128058758 128064373 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04914 1 273 Acyl Lipid Metabolism Gene Families AT1G24360 29.825 3.49e-17 79.3