Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04912 ATGTTCCAAGATCCTTCAATCAAGCTTTTTGGAAGTGATATTCATATTCATATTCATATTCCCATCACCACAGATTCACACTCTTTCTCCTCTCAGATTCACTCTCTTCCACAACAACAACAACAACAACAACCCATCTACATCATGAATGGACTTGAAGAATCAACTAATGCTGATGTTAGTGTTTCTTTGAATGAAGTTTCTTGCAATCAAGCTTATCCACGAGATGATGCTAATGCTATTCCAAACATGTACGAAACCGGCACTTCAAAACCGGGGACCGAATTAGTTCATAGTACTTATGAACAGAAGACTGCCAAAAGAGATATTGACAATCAAGGGAAAGCTTTCAAGAAGCCAGACAAGGTTCTTTCATGTCCTCGCTGCAATAGTTTGGAGACAAAGTTTTGCTATTTCAACAATTACAATGTTAACCAACCAAGGCATTTCTGCAAAAATTGTCATAGGTATTGGACAGCTGGGGGAGCAATTCGGAACGTTCCTATTGGAGCCGGTAAGCGTAGAAATAAGCATCTGCCTTTGCAGAACGTACCTGTCATACACACAGATTCCGACCCTACTAGTCACAGGGAGGAAGTTCCTCTTAGTGAATCACTAGAAACTGTGTTAAATCTCAAGGGCCGTAGAAAAATTGAAACAGACTCTTCTACTGTCAAAGATGATATTGAAGACCCTTCTAACTTTTCTGCAACAGCGGCTAATTCCAGCGAGAAGGAGTATTCTGAAAATGGAATAGAGCATATTGGTTTGACACCACAGTACAATAGCTTAATTCCTTTGCATTCACTTCATTATTATTCTGCTCCTCCATGGACTTATCCATGTTGGAATCCTACGCCATTTAAGCCAGATAACATAACCTCCAGTCCTGCAACCATGATGGCAGTAGAAATACCGATGCCACCTTCATCATATTGGGGTTGTATGCCAAATTGGGTTGGCCCAATGGATGGCATTCAATCACCTTCATCTTCGGTTAGTAGTGGCACGTGTTCCGGGAATAGGTCACCAACTTTAGGAAAACATTGGAGAGATGGAAGTACACAAGCAGAAGATACGACGAAACACAATATTTGGGTGCCGAAAACTATCCGAATCAATAATCCAGAAGAGGCTGCGAAGAGTTCTATATGGTCAACTTTGAGAACAAAATCTCAACAGAACAAACCTATTATGAAAGGAGGTGTTTTTAAATCATTTGAACCTAAGTCAAGTGCAAGTTCTCGAGATTCAGACGATAATCAAATTCTAAGAGCTAACCCTGCTGCTTTCTCTCGGTCCGGAACTTTTCAAGAAAGCATTTAA 1326 0.4042 MFQDPSIKLFGSDIHIHIHIPITTDSHSFSSQIHSLPQQQQQQQPIYIMNGLEESTNADVSVSLNEVSCNQAYPRDDANAIPNMYETGTSKPGTELVHSTYEQKTAKRDIDNQGKAFKKPDKVLSCPRCNSLETKFCYFNNYNVNQPRHFCKNCHRYWTAGGAIRNVPIGAGKRRNKHLPLQNVPVIHTDSDPTSHREEVPLSESLETVLNLKGRRKIETDSSTVKDDIEDPSNFSATAANSSEKEYSENGIEHIGLTPQYNSLIPLHSLHYYSAPPWTYPCWNPTPFKPDNITSSPATMMAVEIPMPPSSYWGCMPNWVGPMDGIQSPSSSVSSGTCSGNRSPTLGKHWRDGSTQAEDTTKHNIWVPKTIRINNPEEAAKSSIWSTLRTKSQQNKPIMKGGVFKSFEPKSSASSRDSDDNQILRANPAAFSRSGTFQESI 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04912 441 MobiDBLite consensus disorder prediction 327 357 - -
Vivi7g04912 441 ProSiteProfiles Zinc finger Dof-type profile. 124 178 IPR003851 GO:0003677|GO:0006355
Vivi7g04912 441 PANTHER CYCLIC DOF FACTOR 2 3 440 IPR045174 GO:0003700|GO:0006355
Vivi7g04912 441 MobiDBLite consensus disorder prediction 408 441 - -
Vivi7g04912 441 MobiDBLite consensus disorder prediction 391 441 - -
Vivi7g04912 441 ProSitePatterns Zinc finger Dof-type signature. 126 162 IPR003851 GO:0003677|GO:0006355
Vivi7g04912 441 MobiDBLite consensus disorder prediction 327 350 - -
Vivi7g04912 441 Pfam Dof domain, zinc finger 121 178 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04912 Vivi-Chr7 128023268 128025969 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04912 90 441 C2C2-Dof Transcription Factor Family AT3G47500 37.221 2.44e-55 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi7g04912 zf-Dof 1.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g04912 - - cam:101489693 548.895