Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04885 ATGGAAGAAAACAACACCCTTCATGCCTCAGATTCAATTGATAAATCTAGGATTGTTGAAGCCAAACCTTTGCGTAGTTTAGCTCCTGTATTGCCTAATCATATTCAATCTTGTTTTCGTGCAAATTATCCATCTGGGTTTCCTCCATTGTATTCGTTTGAGAAACCCCAAGAAATCCCTCTTCCAAAAGGAGCTCAGGAAGTTCATGTTGATGCCGAAACGGCTGAGGAAATTGATGTTTCTGCGAAAGAAACTCCTGTTGCTGCTAAAGTGACTCCAATTAGGTTCTACAAGAGTTCAGTTGACGAGGAAGTGAATCCACGAGCAGATGGAGATGTTAAATCGTTTCGAGAAGGGTTGAACGGCGAAGAATTTGTTGATGATACACGGAAGCGAGGTGGGGAGAGTATACAGAATTGTAAAGAGTTTCTTAAACGGAAGAAGAATAAGAAAACTCGGGAGGCGGGTTTTGATGGTCAAACTAGTTCTAGTGTTGGTGTTAACCCGTCTCCAAATGATGACGGTAATCGTGAGTCGGTTAATCATGTGCTCATGACATATGATTCGATTCGAAGAAGGCTTTGCCAGCTTGAAGATTCGAAGGAACTGAATAGTTCGCTTGCCATCAAGCGTGCGGATCTTAGAGCGAGCAATGCTTTGACGTGTAAAGGGATTAAAACGAATTTGAGGAGAAGAGCGGGAGCGGTGCCTGGGATTGAGGTTGGGGATATTTTCTTTTTTCGAATGGAGATGTGTCTTGTGGGTTTACATGGTCAATCGATGGGTGGAATTGATTATATGAATTTCAAGGACGGGTCGAAGGAGGATACTGTGGCGTTAAGTGTTGTTTCATCGGGAATGTATGGTGATGATACGGAGGATAATGATGTTTTAGTTTATAGTGGTCAAGGTGAGAATTTCAACAAGAAAGATAAGCATGTGACTGATCAGAAGCTCCAAAGGGGTAATCTTGCTTTGGACAGAAGTGCGCAGCGTCACGACGAAGTTAGAGTCATTCGGGGATTGAGAGATGCTGTGAGTAGAACAGCGAAAATCTATATGTATGATGGTTTGTATAAAATCCAAGATTCTTGGATTGAAAGAGGGAAATCTGGTGGTGGTATATTTAAGTATAAGTTAGTAAGGTTGCCTGGACAAAAAAGTGCTTTTGGTGCTTGGAAATTGGCTCAAAAGTGGAAAGCAGGTTCTGCTTCAAGGAATGGTTTTATTCTTGCCGACCTTTCCAATGGAGTTGAAAGTATTCCCGTATCACTTGTCAATGATGTTGATGATGAAAAAGGTCCTGCCTTTTTCACTTATTTCACGTCTCTCAAGAAACCGAAACCTTTTGGTTTAGTACAGCCTTCATTTGGCTGCAATTGTAAAGCATGCATCCCTGGTGATTTGAACTGTTCTTGCATTCAAAGAAATGAAGGTGATTTTCCGTACACTGCAAATAGTATTCTAGTGAGTCGGAAGCCGCTGATTCATGAATGTGGCCCTATGTGTCGGTGTCTTCCCAACTGCAAAAATCGAGTATCGCAGACCGGGTTAAAGCCACACATGGAGGTTTTCAGAACAAAGGATAGAGGCTGGGGGCTTCGGACACTGGATCCTATTCGCGCTGGTAGCTTTATTTGCGAGTATGCAGGCGAAGTTATTGACAAAGCTAAGGTATCTCAGAATGATGAAGAAGATAATGATGAATATATTTTCGACACAAGCCGTATTTATCAACCATTCAAGTGGAATCATGATCCTAGGTTACTGGAAGAAGTAAGTTCAAATGTTTTGAGTGAAGATTATACTATACCGTCTCCTCTCATTATAAGTGCCAAGAATGTGGGAAATGTGGGTAGATTCATGAACCATAGTTGCTCCCCGAATGTGTTTTGGCAGCCGGTCCTATATGCAGAAAACAATCAATCCTTTCTCCACATTGTATTTTTCGCCCTTAAACATATTCCTCCTATGGCAGAGTTAACATATGATTATGGATTTGTCCTTGCTGGCCATGCCGAGGGTAGTAGTGCACTAAGAAGGAAAAATAAATGCCTGTGTGGATCAGAAAAGTGCCGTGGTTTCTTTGGTTGA 2094 0.4183 MEENNTLHASDSIDKSRIVEAKPLRSLAPVLPNHIQSCFRANYPSGFPPLYSFEKPQEIPLPKGAQEVHVDAETAEEIDVSAKETPVAAKVTPIRFYKSSVDEEVNPRADGDVKSFREGLNGEEFVDDTRKRGGESIQNCKEFLKRKKNKKTREAGFDGQTSSSVGVNPSPNDDGNRESVNHVLMTYDSIRRRLCQLEDSKELNSSLAIKRADLRASNALTCKGIKTNLRRRAGAVPGIEVGDIFFFRMEMCLVGLHGQSMGGIDYMNFKDGSKEDTVALSVVSSGMYGDDTEDNDVLVYSGQGENFNKKDKHVTDQKLQRGNLALDRSAQRHDEVRVIRGLRDAVSRTAKIYMYDGLYKIQDSWIERGKSGGGIFKYKLVRLPGQKSAFGAWKLAQKWKAGSASRNGFILADLSNGVESIPVSLVNDVDDEKGPAFFTYFTSLKKPKPFGLVQPSFGCNCKACIPGDLNCSCIQRNEGDFPYTANSILVSRKPLIHECGPMCRCLPNCKNRVSQTGLKPHMEVFRTKDRGWGLRTLDPIRAGSFICEYAGEVIDKAKVSQNDEEDNDEYIFDTSRIYQPFKWNHDPRLLEEVSSNVLSEDYTIPSPLIISAKNVGNVGRFMNHSCSPNVFWQPVLYAENNQSFLHIVFFALKHIPPMAELTYDYGFVLAGHAEGSSALRRKNKCLCGSEKCRGFFG 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04885 697 Gene3D SET domain 403 696 IPR046341 -
Vivi7g04885 697 ProSiteProfiles YDG domain profile. 234 382 IPR003105 -
Vivi7g04885 697 ProSiteProfiles SET domain profile. 520 666 IPR001214 GO:0005515
Vivi7g04885 697 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 217 401 - -
Vivi7g04885 697 ProSiteProfiles Post-SET domain profile. 681 697 IPR003616 -
Vivi7g04885 697 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 97 697 IPR025794 GO:0016571
Vivi7g04885 697 Pfam SET domain 531 666 IPR001214 GO:0005515
Vivi7g04885 697 Gene3D - 216 400 IPR036987 -
Vivi7g04885 697 Pfam SAD/SRA domain 233 386 IPR003105 -
Vivi7g04885 697 SMART G9a_1 229 386 IPR003105 -
Vivi7g04885 697 MobiDBLite consensus disorder prediction 156 179 - -
Vivi7g04885 697 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 126 691 - -
Vivi7g04885 697 SUPERFAMILY SET domain 398 672 IPR046341 -
Vivi7g04885 697 MobiDBLite consensus disorder prediction 151 179 - -
Vivi7g04885 697 SMART set_7 520 672 IPR001214 GO:0005515
Vivi7g04885 697 SMART preset_2 411 504 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi7g04885 697 SUPERFAMILY PUA domain-like 218 403 IPR015947 -
Vivi7g04885 697 ProSiteProfiles Pre-SET domain profile. 457 517 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi7g04885 697 Pfam Pre-SET motif 415 512 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04885 Vivi-Chr7 127272693 127277188 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g04885 5 697 Su(var)3-9 homologs AT1G73100 48.857 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi7g04885 SAD_SRA 1.9e-46 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04885 7 127272693 127277188 Vivi7g04885 7 127272693 127277188 ECH