Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g04705 ATGAAAACATTAACTGTTAATACTGAGGATTCCTTTTCAAGTTTACTGGAATTTGCTTCTAACAACGATATAGAAGGATTTAAGCAGCTTTTAGATAAAGAAGGAGCTTCTTCGATCAATGAGGTAGGGATTTGGTATGGTCGGCAAAATGGGTCTAATAAGATTGTTATGGATTATAAAACTCCTTTGATGGTTGCTGCTACTTATGGTAGTATTGATGTTATGAAGCTTATATTGTCGTATCCTGAAGCTGATGTGGATTTTGCTTGTGGGGTGAATAAAAGCACTGCTCTTCACTGTGCTGCTTCTGGTGGGTCTGTTAATGTGGTTGAAGCTGTTAGGGTTCTCGTATCGGCTGGTGCCGATGTTAGTTGCGTTGATGCCAATGGAAATCTTCCTGTTGATGTTTTTGTTGTTCCTCCGATGATGGAAAGCGTGAAAGCGGTTCTCGAGGAACTTCTTTTGGATAATGGTTCTGAAAATGGCTCTGTTGGTGAGTTCTCTGGTCCGGTGTCTGTTGATGGTTCAAGTCTCGGTTCGCTTGAAAATGGGATGCCGTTGCCAATGCCATACTCTCCTTCAGTGTCACCACCTTCTCCTGTGGCGGATTTGAAGTTTACTGAGAAGAAAGAGTATCTGGTTGATCCATCAATTCCTGATATAAAAGACAGCATATATGCAAGCGATGAATTTCGGATGTTTTCTTTCAAGGTTCGTCCTTGTTCTCGTGCATACTCTCATGATTGGACTGAGTGTCCGTTTGTTCATCCGGGAGAGAATGCTCGGAGGAGAGATCCCAGGAAGTTTCATTACAGCTGTGTGCCTTGCCCTGAATTTAGGAAAGGGACTTGTAGGCGTGGAGATATGTGTGAATATGCTCATGGAGTATTCGAGTGCTGGCTACACCCAGCTCAGTATCGAACCCGTCTCTGTAAAGATGGTACTAGTTGTAATAGAAGGGTGTGTTTTTTTGCACACATTGCAGAGGAATTGAGGCCATTGTATCCGTCAACTGGATCTGCGGTTGCTTCACCGCGTTCTTCTGGATCTGCTCTTAATGTGATGGACATGGCTGCTGCAATGAGCCTTTTGCCTGGTTCACCTTCATCAGTCTCTTCCATGTCTCCTCATTTTGCCCAGCCAATGTCCCCTTCTGGGAATGGCATCTCATGGGCACCGCAAAATGTTCCAGCTCTTCATTTACCAGGAAACATTCTGCAATCTAGTCGATTGAGATCTTCTTTTAGTGCTCGCGACATTCCACCTGAAGACTTCAGTGTGCTTAGCGAATTTGATCGCCAGCAGCACCTTATGAATGACTTGAGCTGTTTCTCACAACCCCATCCCGGCTCTTGTCGGTCTAAAGCACTAACGCCGTCAAATCTTGAAGAGCTCTTTTCTGCTGAGACTTTGTCATCTCCCCGGTATTCTGACGCATCAATGCCTTCTGTTTTTTCCCCCTCACATAAATCAGCTGCTATGAATCAGTTTAAACAGCTTCAAAATATGTTATCGCCTATAAATACTAACATGCTATCTCCTAAAAATGTTGAGCATCCTCTGTTACAGGCTTCATTTGGCGTCCCTTCTTCAGGTAGGATGTCACCTAGAAAGGTTGAACCAATCTCCCCAATGAGCCCTCGAATGTCTGCATTTGCTCATCGCGAGAAACAACAGCTGCGGAGTAATAGTTCTAGAGATCTTGGTCCAATAAGCGTTGAACCAATGTCCCCAATGAGCCCTCGAATGTCTGCATATGTTCATCATGAGAAACAACAGCAACAGCTGCGGAGTATTAGTTCTAGGGACCTTGGTTCCAACATTCCTGCCTTAGTTACTGGATCCCCTACATGGTCTAAGTGGGGATCTCCTAATGGGTTGGCTGATTGGTCGGTAAAGGGAGAAGGAATAAGTTGTCAAATGCGCAGCGCATCCTCATTTGAACATAAAATCAACGCGGAGCAAGAGCCTGATCTATCATGGGTCCAATCACTAGTGAAGGATTCATCACCCGAGATGATTAAAGAGAAGGTTGTGTTCTCCGGCCCTATTGCATCCGGTGATGAGTTGAATTCCAATTCACAAATTGAATCTATTGATCATTCTGTTCTAGGAGCTTGGCTTGAGCAAAAGAAACTGGATCAGCTCGTAGTCTAA 2157 0.4432 MKTLTVNTEDSFSSLLEFASNNDIEGFKQLLDKEGASSINEVGIWYGRQNGSNKIVMDYKTPLMVAATYGSIDVMKLILSYPEADVDFACGVNKSTALHCAASGGSVNVVEAVRVLVSAGADVSCVDANGNLPVDVFVVPPMMESVKAVLEELLLDNGSENGSVGEFSGPVSVDGSSLGSLENGMPLPMPYSPSVSPPSPVADLKFTEKKEYLVDPSIPDIKDSIYASDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGTCRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHIAEELRPLYPSTGSAVASPRSSGSALNVMDMAAAMSLLPGSPSSVSSMSPHFAQPMSPSGNGISWAPQNVPALHLPGNILQSSRLRSSFSARDIPPEDFSVLSEFDRQQHLMNDLSCFSQPHPGSCRSKALTPSNLEELFSAETLSSPRYSDASMPSVFSPSHKSAAMNQFKQLQNMLSPINTNMLSPKNVEHPLLQASFGVPSSGRMSPRKVEPISPMSPRMSAFAHREKQQLRSNSSRDLGPISVEPMSPMSPRMSAYVHHEKQQQQLRSISSRDLGSNIPALVTGSPTWSKWGSPNGLADWSVKGEGISCQMRSASSFEHKINAEQEPDLSWVQSLVKDSSPEMIKEKVVFSGPIASGDELNSNSQIESIDHSVLGAWLEQKKLDQLVV 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g04705 718 Pfam Ankyrin repeats (3 copies) 19 125 IPR002110 GO:0005515
Vivi7g04705 718 ProSiteProfiles Zinc finger C3H1-type profile. 275 297 IPR000571 GO:0046872
Vivi7g04705 718 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
Vivi7g04705 718 Gene3D - 270 333 - -
Vivi7g04705 718 PANTHER UNKEMPT FAMILY MEMBER 17 669 IPR045234 -
Vivi7g04705 718 SUPERFAMILY Ankyrin repeat 6 150 IPR036770 -
Vivi7g04705 718 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
Vivi7g04705 718 Gene3D - 2 147 IPR036770 -
Vivi7g04705 718 ProSiteProfiles Ankyrin repeat profile. 93 128 IPR002110 GO:0005515
Vivi7g04705 718 SMART ANK_2a 93 125 IPR002110 GO:0005515
Vivi7g04705 718 SMART ANK_2a 10 41 IPR002110 GO:0005515
Vivi7g04705 718 SMART ANK_2a 58 88 IPR002110 GO:0005515
Vivi7g04705 718 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Vivi7g04705 718 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Vivi7g04705 718 ProSiteProfiles Ankyrin repeat region circular profile. 93 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g04705 Vivi-Chr7 120181591 120185601 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi7g04705 Ank_2 1.5e-09 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g04705 7 120181591 120185601 Vivi7g04705 7 120181591 120185601 ECH