Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi7g00426 | ATGAGAAGAATCTCCTCTCTGCTTCTAAAACAACCTTCTCCTACAATCACACACATCCACTTCTCCTTCCCTCTCCCCCTCCAAACCCATCCCCCACACAACAACAATGCCACACCACCATCTCCCCATTCATTCTCCCGCTCCTTCAAAACCCTATCTCTCCCTCCCCCAGAACTCGTCGAACCTTTCTGCGACCTCTCCGACGTCGTTTCCTCTAAACAAAACCTCCAACCCTCTCCATGGTTCACACAAATCCTCAACCTCCTCGACAACTCCCCAACCATGGAATCAAATCTCGATTCCTTCTGCCGCCAATTTCTCATCACTCTCTCCCCCTCTTTCGTCGCGCACACTCTCCGTTCCCTCAACAACCACCAAACCGCCCTCCGTTTCTTCACCTGGGCTTCCAACCAACATAACTACTCCCATTCCCTCGATTGCTACGTTTCACTAATCAACCTCCTTCTATCTCCCTCAACCACCACTTCAACCACCACCGCCTCCACCTCCGCCGCATTAAATGTTTTCGCAGAACTTCAACGTAACCGCCTCCCCTTAACATCCCCATCCGCCAATTCCCTCATCAAAACCTTCGGTAACGCCGGCTTAGTGAACGAGCTTCTATTAGTTTGGCGTGGAATGAACGAACAAAACATCCAACCAAGCCTCTTCACTTACAATTCCCTTCTTAACGGACTCGTTGGTTCCTCTTTTATTGAATCAGCCGAGCGTGTTTTCGAGGCGATGAAAGAAGGAAGAATAAAGCCTGATGTTGTAACCTACAATACTTTGATCAAAGGGTATTGCAAGATTGGGAAAACACGCAAGGCGAGTGAGATGGTTCGCGAAATGGAGGTAATTAACTTGGAGCCTGATGTTGTTAGTTATATGACAATAATGCAGGCTTGTTATGCGGAAGGTGATGTTGATTGTTGTTTGAGTCTTTACCATGAGATGGAGGATAAGGGGTTTGAAGTTCCTTCTCATTGTTATAGTTTGGTGATTTGCGGGCTTTGTAAGACCGGGAAGGTTTTAGAAGCTTATGCTTTGTTTGAGAATATGATTAGGAATGGTTGTAAGGGTAATAAGGCTGTTTACACTGCTTTGATTGATTGTTATGGGAAGAGTGGAAATTCGGATGGAGCTTTAAGGTTGTTTGAGAGGATGAAAATGGATGGGATTGAACCTGATGAGGTTACTTATGGTGCTATTGTTAATGGATTGTGTAAGAGTGGGAGAGTGGAGGAAGCTTTGGGGTATTTTCGGTGTTGTAATGAGAATGGTGTTGTTGTCAATGCTGTTTTTTATTCTAGTTTGATTGATGGACTTGGAAAGGCAGGGAGGGTTGATGAAGCTGAGAAGGTGTTTGATGAAATGGCCCATAGGGGTTGTCTGCCGGATTCATATTGCTACAATGCGCTCATCGATGGACTGTGTAAGTGTGGGAGGATAGATGATGCTCTAGCGCTGTTTAAGAGGATGGAGTGTGATGGTTGTGAGCATACTGTGTATACGTTTACTATACTTATCAGTGAGCTTTTCAGAGTGCATAGGAATGAAGAGGCGGTCAAGATGTGGGATTTGATGATTGACAAAGGGATAACGCCGAATGTTGCTTGTTTTAGGGCTCTTTCAATTGGGTTGTGTCTTTCGGGGAAAGTTGCGAGGGCTTGTAAAGTGCTGGATGAGCTTGCACCTATGGGGGTTGTTCTTGAAACGGCTTATGAAGATATGATTGGAGCGCTGTGTAAAGCTGGCCGTGTTAAGGAGGCTTGTAAGTTGGCTGATGGAATTGTGGATAGGGGTAGAGAAATACCTGGGAAGATTAGAACTCTGATGATTCATTCCTTAAGGAAAGCTGGGAATGCTGATTTGGCTATCAAGTTGATGCATAGCAAGATTGGTATTGGATATGATCGAATGAGGAGCGTTAAAAAGAGAGTCAAGTTTCAAACCCTTTTTGACAACTGA | 1971 | 0.451 | MRRISSLLLKQPSPTITHIHFSFPLPLQTHPPHNNNATPPSPHSFSRSFKTLSLPPPELVEPFCDLSDVVSSKQNLQPSPWFTQILNLLDNSPTMESNLDSFCRQFLITLSPSFVAHTLRSLNNHQTALRFFTWASNQHNYSHSLDCYVSLINLLLSPSTTTSTTTASTSAALNVFAELQRNRLPLTSPSANSLIKTFGNAGLVNELLLVWRGMNEQNIQPSLFTYNSLLNGLVGSSFIESAERVFEAMKEGRIKPDVVTYNTLIKGYCKIGKTRKASEMVREMEVINLEPDVVSYMTIMQACYAEGDVDCCLSLYHEMEDKGFEVPSHCYSLVICGLCKTGKVLEAYALFENMIRNGCKGNKAVYTALIDCYGKSGNSDGALRLFERMKMDGIEPDEVTYGAIVNGLCKSGRVEEALGYFRCCNENGVVVNAVFYSSLIDGLGKAGRVDEAEKVFDEMAHRGCLPDSYCYNALIDGLCKCGRIDDALALFKRMECDGCEHTVYTFTILISELFRVHRNEEAVKMWDLMIDKGITPNVACFRALSIGLCLSGKVARACKVLDELAPMGVVLETAYEDMIGALCKAGRVKEACKLADGIVDRGREIPGKIRTLMIHSLRKAGNADLAIKLMHSKIGIGYDRMRSVKKRVKFQTLFDN | 656 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi7g00426 | 656 | Gene3D | Tetratricopeptide repeat domain | 117 | 286 | IPR011990 | GO:0005515 | |
| Vivi7g00426 | 656 | Pfam | Pentatricopeptide repeat domain | 490 | 544 | IPR002885 | - | |
| Vivi7g00426 | 656 | SUPERFAMILY | HCP-like | 299 | 493 | - | - | |
| Vivi7g00426 | 656 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 327 | 361 | IPR002885 | - | |
| Vivi7g00426 | 656 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 467 | 501 | IPR002885 | - | |
| Vivi7g00426 | 656 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 222 | 256 | IPR002885 | - | |
| Vivi7g00426 | 656 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 502 | 536 | IPR002885 | - | |
| Vivi7g00426 | 656 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 292 | 326 | IPR002885 | - | |
| Vivi7g00426 | 656 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 362 | 396 | IPR002885 | - | |
| Vivi7g00426 | 656 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 432 | 466 | IPR002885 | - | |
| Vivi7g00426 | 656 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 257 | 291 | IPR002885 | - | |
| Vivi7g00426 | 656 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL | 26 | 440 | - | - | |
| Vivi7g00426 | 656 | NCBIfam | pentatricopeptide repeat | 504 | 538 | IPR002885 | - | |
| Vivi7g00426 | 656 | NCBIfam | pentatricopeptide repeat | 294 | 325 | IPR002885 | - | |
| Vivi7g00426 | 656 | NCBIfam | pentatricopeptide repeat | 224 | 258 | IPR002885 | - | |
| Vivi7g00426 | 656 | NCBIfam | pentatricopeptide repeat | 330 | 362 | IPR002885 | - | |
| Vivi7g00426 | 656 | NCBIfam | pentatricopeptide repeat | 259 | 292 | IPR002885 | - | |
| Vivi7g00426 | 656 | NCBIfam | pentatricopeptide repeat | 469 | 501 | IPR002885 | - | |
| Vivi7g00426 | 656 | NCBIfam | pentatricopeptide repeat | 436 | 468 | IPR002885 | - | |
| Vivi7g00426 | 656 | NCBIfam | pentatricopeptide repeat | 365 | 398 | IPR002885 | - | |
| Vivi7g00426 | 656 | NCBIfam | pentatricopeptide repeat | 399 | 422 | IPR002885 | - | |
| Vivi7g00426 | 656 | Gene3D | Tetratricopeptide repeat domain | 424 | 494 | IPR011990 | GO:0005515 | |
| Vivi7g00426 | 656 | Gene3D | Tetratricopeptide repeat domain | 572 | 633 | IPR011990 | GO:0005515 | |
| Vivi7g00426 | 656 | Gene3D | Tetratricopeptide repeat domain | 355 | 423 | IPR011990 | GO:0005515 | |
| Vivi7g00426 | 656 | Gene3D | Tetratricopeptide repeat domain | 495 | 569 | IPR011990 | GO:0005515 | |
| Vivi7g00426 | 656 | Gene3D | Tetratricopeptide repeat domain | 287 | 354 | IPR011990 | GO:0005515 | |
| Vivi7g00426 | 656 | Pfam | PPR repeat | 254 | 285 | IPR002885 | - | |
| Vivi7g00426 | 656 | MobiDBLite | consensus disorder prediction | 28 | 47 | - | - | |
| Vivi7g00426 | 656 | Pfam | PPR repeat family | 432 | 480 | IPR002885 | - | |
| Vivi7g00426 | 656 | Pfam | PPR repeat family | 364 | 410 | IPR002885 | - | |
| Vivi7g00426 | 656 | Pfam | PPR repeat family | 291 | 340 | IPR002885 | - | |
| Vivi7g00426 | 656 | Pfam | PPR repeat | 578 | 599 | IPR002885 | - | |
| Vivi7g00426 | 656 | Pfam | PPR repeat | 224 | 251 | IPR002885 | - | |
| Vivi7g00426 | 656 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 397 | 431 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi7g00426 | 45 | 638 | Glycosyltransferase | AT1G05670 | 25.350 | 1.35e-48 | 180 |