Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00353 ATGAGGCCATCCATCTTCAGATCCATCCACTCCGCCGTCTCCCGCAGCCGCTCTCAGCTACTCCGCCGTGGCTATGCTACCGAACCGGTCCCAGAACGCAAGGTGGCCATCCTCGGCGCTGCCGGCGGGATCGGTCAGCCCCTCTCTCTTCTGATGAAGCTCAACCCTCTTGTTTCGACCCTATCTCTTTACGATATCGCTGGAACCCCTGGTGTTGCCGCCGATGTTAGCCACATCAACTCCAGATCTGAGGTTTCTGGGTATGCTGGGGAGGAAGAGCTTGGTAAAGCTTTGGAGGGTGCTGATGTTGTTATAATTCCTGCTGGTGTGCCAAGAAAGCCTGGAATGACTCGTGATGATCTTTTCAACATTAATGCTGGCATTGTCAAGTCACTTGCCACTGCTATTGCTAAGTACTGCCCCCATGCCCTTGTTAACATGATAAGCAACCCTGTGAACTCCACAGTTCCCATTGCTGCTGAGGTTTTCAAGAAGGCAGGGACATATGACGAAAAGAGATTGTTTGGAGTTACAACCCTTGACGTGGTTAGGGCAAAAACTTTCTATGCTGGGAAAGCTAGAGTTCCAGTTGCCGATGTAAATGTACCTGTTATAGGAGGCCATGCAGGAGTTACTATTCTCCCACTATTTTCTCAGGCAACACCTTCTGCCAATCTGGATGCTGATGTCATTGAGGCACTTACAAGGAGGACACAAGATGGAGGAACAGAAGTTGTGACTGCCAAGGCTGGAAAGGGTTCTGCAACTTTGTCAATGGCTTATGCTGGAGCCATATTTGCTGATGCTTGCCTCAAAGGTCTTAACGGAGTTCCAGATGTTGTTGAGTGCTCATATGTGCAATCCAATATCATCAGTGAACTTCCTTTCTTTGCTTCCAAGGTGAGGATTGGGAAGAATGGTGTTGAGGAAATTCTGGGCTTAGGTTCTCTCTCAGATTTCGAGCAAGAAGGTCTCGAAAAACTCAAGTCTGAACTCAAATCATCTATTGAAAAGGGAATCAAATTTGCCTCCCAGTAA 1038 0.4827 MRPSIFRSIHSAVSRSRSQLLRRGYATEPVPERKVAILGAAGGIGQPLSLLMKLNPLVSTLSLYDIAGTPGVAADVSHINSRSEVSGYAGEEELGKALEGADVVIIPAGVPRKPGMTRDDLFNINAGIVKSLATAIAKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKRLFGVTTLDVVRAKTFYAGKARVPVADVNVPVIGGHAGVTILPLFSQATPSANLDADVIEALTRRTQDGGTEVVTAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSYVQSNIISELPFFASKVRIGKNGVEEILGLGSLSDFEQEGLEKLKSELKSSIEKGIKFASQ 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00353 345 ProSitePatterns Malate dehydrogenase active site signature. 177 189 IPR001252 GO:0006108|GO:0016615
Vivi7g00353 345 SUPERFAMILY LDH C-terminal domain-like 177 343 IPR015955 GO:0003824|GO:0016616
Vivi7g00353 345 Gene3D - 178 344 IPR015955 GO:0003824|GO:0016616
Vivi7g00353 345 FunFam Malate dehydrogenase 31 177 - -
Vivi7g00353 345 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 178 342 IPR022383 GO:0016616
Vivi7g00353 345 Pfam lactate/malate dehydrogenase, NAD binding domain 34 176 IPR001236 GO:0016491
Vivi7g00353 345 PIRSF Lac_mal_DH 29 343 IPR001557 GO:0016616|GO:0019752
Vivi7g00353 345 NCBIfam malate dehydrogenase 34 343 IPR010097 GO:0006099|GO:0030060
Vivi7g00353 345 FunFam Malate dehydrogenase 178 345 - -
Vivi7g00353 345 PANTHER MALATE AND LACTATE DEHYDROGENASE 16 344 - -
Vivi7g00353 345 Gene3D - 32 177 - -
Vivi7g00353 345 CDD MDH_glyoxysomal_mitochondrial 34 343 IPR010097 GO:0006099|GO:0030060
Vivi7g00353 345 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 34 176 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00353 Vivi-Chr7 20970648 20973850 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g00353 7 20970648 20973850 Vivi7g00353 7 20970648 20973850 ECH