Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00301 ATGGGTCGCCCTCCCAGTAACGGAGGCCCCGCCTTCCGCTTCACCCAGCCGGAGGTAACAGAAATGGAAGCTATTCTTTCAGAACACAACAATGCAATGCCAGCACGAGATGTTCTTCAGGCTCTTGCAGACAAGTTCAGCGAATCACCTGACCGTAAAGGCAAAATTACCGTACAGAATAAACAGGTATGGAATTGGTTTCAAAATAAGCGATATGCGATAAGGGCTAAAACTAGTAAGACTCCTGCAAAGTTAAATATCACACCCATGCCTCGGGTTGATTTGGCCCCAGGAAGGATTATGGCTCAACCAACAGCTTCTCCGATTCCCGCTCCTTCAGCTTCAGTTCAAGGAACAGCAAAATTAGCTCCTGAAAATTCAGTTATGGAATTTGAAGCTAAATCTGGAAGGGATGGAGCATGGTATGATGTGGCTAACTTTCTATCATACAGACATTTGGAGAGCAGTGATCCGGAAGTGCTAGTGCGCTTTTCCGGTTTTGGATCTGATGAAGATGAGTGGATTAATGTACGAAAGAATGTCAGGCCACGCTCTCTGCCATGTGAGTCTTCAGAATGTGTCGCAGTGCTCGCTGGAGATCTCATACTTTGTTTTCAGGAAGGTAAAGAACAAGCCCTTTACTTTGATGCACATGTCCTTGATGCTCAAAGACGGAGGCACGACGTAAGAGGTTGTCGTTGTAGATTTTTGGTTCGCTATGATCATGATCAGTCTGAGGAAATGCAGAATGATGACTGCAAAACAGAAATCGTGACGCTTAGGAAGGTTTGTCGGAGGCCTGAAACGGATTACAGATTACATCAACTTCATGCCGTGAATGATGCACCACCTGTGGATCATCAGAAGATTAGCTTGGATCATCCAGCAAATGTTCATAGCATGAGGGTTACTAATTCTTCTGAAATGGTGCAAAAGCAGCAACAGATTGCAAATATTCATATAGTAACACCAGTTTTGCAAACAAACGTTTCCATTCCACCACAAAGTATGAATGTGGATCCAGTGAAAATTGAAACAAAACCTGATATTCAAGCTGGAAATCCTATCACTCTAGGCACCGCCACATTCAACCCCAGCGTCATTACTACTAGCAGTGTTCCGGAAGTTTCGACTCAGAACCTGCCCGAAGAGAAGTAA 1158 0.4447 MGRPPSNGGPAFRFTQPEVTEMEAILSEHNNAMPARDVLQALADKFSESPDRKGKITVQNKQVWNWFQNKRYAIRAKTSKTPAKLNITPMPRVDLAPGRIMAQPTASPIPAPSASVQGTAKLAPENSVMEFEAKSGRDGAWYDVANFLSYRHLESSDPEVLVRFSGFGSDEDEWINVRKNVRPRSLPCESSECVAVLAGDLILCFQEGKEQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEMQNDDCKTEIVTLRKVCRRPETDYRLHQLHAVNDAPPVDHQKISLDHPANVHSMRVTNSSEMVQKQQQIANIHIVTPVLQTNVSIPPQSMNVDPVKIETKPDIQAGNPITLGTATFNPSVITTSSVPEVSTQNLPEEK 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00301 385 Pfam SAWADEE domain 129 249 IPR032001 GO:0003682
Vivi7g00301 385 Gene3D - 10 86 - -
Vivi7g00301 385 Gene3D - 188 269 - -
Vivi7g00301 385 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Vivi7g00301 385 CDD homeodomain 13 75 IPR001356 GO:0003677
Vivi7g00301 385 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 332 IPR039276 -
Vivi7g00301 385 SMART HOX_1 7 81 IPR001356 GO:0003677
Vivi7g00301 385 SUPERFAMILY Homeodomain-like 12 77 IPR009057 -
Vivi7g00301 385 Gene3D - 126 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00301 Vivi-Chr7 17392924 17399013 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vivi7g00301 SAWADEE 6e-38 CL0049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g00301 7 17392924 17399013 Vivi7g00301 7 17392924 17399013 ECH